Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3204 and Rru_A3205 are separated by 112 nucleotides Rru_A3205 and Rru_A3206 are separated by 193 nucleotides Rru_A3206 and Rru_A3207 are separated by 88 nucleotides Rru_A3207 and Rru_A3208 are separated by 983 nucleotides
Rru_A3204: Rru_A3204 - C-terminal processing peptidase (NCBI), at 3,695,033 to 3,696,733
_A3204
Rru_A3205: Rru_A3205 - Ribosomal protein L33 (NCBI), at 3,696,846 to 3,697,013
_A3205
Rru_A3206: Rru_A3206 - Response regulator receiver domain protein (CheY) (NCBI), at 3,697,207 to 3,697,587
_A3206
Rru_A3207: Rru_A3207 - Protein of unknown function DUF423 (NCBI), at 3,697,676 to 3,698,059
_A3207
Rru_A3208: Rru_A3208 - Protein of unknown function DUF29 (NCBI), at 3,699,043 to 3,699,534
_A3208
Position (kb)
3697
3698
3699 Strain fitness (log2 ratio)
-1
0
1
2 at 3696.680 kb on + strand at 3696.681 kb on - strand at 3696.753 kb on + strand at 3697.012 kb on - strand at 3697.271 kb on + strand, within Rru_A3206 at 3697.271 kb on + strand, within Rru_A3206 at 3697.271 kb on + strand, within Rru_A3206 at 3697.271 kb on + strand, within Rru_A3206 at 3697.271 kb on + strand, within Rru_A3206 at 3697.272 kb on - strand, within Rru_A3206 at 3697.416 kb on + strand, within Rru_A3206 at 3697.534 kb on - strand, within Rru_A3206 at 3697.914 kb on + strand, within Rru_A3207 at 3697.914 kb on + strand, within Rru_A3207 at 3697.914 kb on + strand, within Rru_A3207 at 3697.914 kb on + strand, within Rru_A3207 at 3697.914 kb on + strand, within Rru_A3207 at 3697.915 kb on - strand, within Rru_A3207 at 3697.915 kb on - strand, within Rru_A3207 at 3697.915 kb on - strand, within Rru_A3207 at 3697.915 kb on - strand, within Rru_A3207 at 3697.924 kb on - strand, within Rru_A3207 at 3697.924 kb on - strand, within Rru_A3207 at 3698.075 kb on + strand at 3698.076 kb on - strand at 3698.076 kb on - strand at 3698.076 kb on - strand at 3698.100 kb on - strand at 3698.191 kb on - strand at 3698.277 kb on + strand at 3698.278 kb on - strand at 3698.278 kb on - strand at 3698.278 kb on - strand at 3698.278 kb on - strand at 3698.278 kb on - strand at 3698.328 kb on + strand at 3698.329 kb on - strand at 3698.653 kb on + strand at 3698.653 kb on + strand at 3698.654 kb on - strand at 3698.654 kb on - strand at 3698.715 kb on + strand at 3698.716 kb on - strand at 3698.730 kb on + strand at 3698.730 kb on + strand at 3698.787 kb on + strand at 3698.787 kb on + strand at 3698.788 kb on - strand at 3698.798 kb on - strand at 3698.802 kb on - strand at 3699.044 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 3,696,680 + -0.0 3,696,681 - +1.1 3,696,753 + -1.6 3,697,012 - -0.0 3,697,271 + Rru_A3206 0.17 -0.4 3,697,271 + Rru_A3206 0.17 -0.0 3,697,271 + Rru_A3206 0.17 -0.0 3,697,271 + Rru_A3206 0.17 -1.0 3,697,271 + Rru_A3206 0.17 -0.0 3,697,272 - Rru_A3206 0.17 -1.0 3,697,416 + Rru_A3206 0.55 -1.3 3,697,534 - Rru_A3206 0.86 -0.0 3,697,914 + Rru_A3207 0.62 +1.0 3,697,914 + Rru_A3207 0.62 -0.0 3,697,914 + Rru_A3207 0.62 -0.0 3,697,914 + Rru_A3207 0.62 -0.7 3,697,914 + Rru_A3207 0.62 -0.1 3,697,915 - Rru_A3207 0.62 +2.6 3,697,915 - Rru_A3207 0.62 -1.0 3,697,915 - Rru_A3207 0.62 -0.0 3,697,915 - Rru_A3207 0.62 -0.4 3,697,924 - Rru_A3207 0.65 +0.2 3,697,924 - Rru_A3207 0.65 +0.1 3,698,075 + -0.0 3,698,076 - -0.3 3,698,076 - +1.3 3,698,076 - -0.6 3,698,100 - -0.1 3,698,191 - +1.1 3,698,277 + +0.4 3,698,278 - -0.0 3,698,278 - +2.0 3,698,278 - -0.0 3,698,278 - -0.0 3,698,278 - -0.0 3,698,328 + +0.0 3,698,329 - +1.7 3,698,653 + -0.0 3,698,653 + +0.2 3,698,654 - +1.5 3,698,654 - -0.0 3,698,715 + -0.0 3,698,716 - -0.0 3,698,730 + -0.0 3,698,730 + -1.0 3,698,787 + -0.0 3,698,787 + -0.0 3,698,788 - +2.5 3,698,798 - +1.2 3,698,802 - +0.5 3,699,044 + -0.5
Or see this region's nucleotide sequence