Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3151 and Rru_A3152 overlap by 4 nucleotides Rru_A3152 and Rru_A3153 are separated by 25 nucleotides
Rru_A3151: Rru_A3151 - serine/threonine protein kinase (NCBI), at 3,635,897 to 3,637,894
_A3151
Rru_A3152: Rru_A3152 - hypothetical protein (NCBI), at 3,637,891 to 3,638,922
_A3152
Rru_A3153: Rru_A3153 - conserved virulence factor protein (NCBI), at 3,638,948 to 3,641,653
_A3153
Position (kb)
3637
3638
3639 Strain fitness (log2 ratio)
-2
-1
0
1 at 3637.029 kb on + strand, within Rru_A3151 at 3637.030 kb on - strand, within Rru_A3151 at 3637.030 kb on - strand, within Rru_A3151 at 3637.030 kb on - strand, within Rru_A3151 at 3637.136 kb on + strand, within Rru_A3151 at 3637.137 kb on - strand, within Rru_A3151 at 3637.158 kb on + strand, within Rru_A3151 at 3637.159 kb on - strand, within Rru_A3151 at 3637.159 kb on - strand, within Rru_A3151 at 3637.303 kb on + strand, within Rru_A3151 at 3637.684 kb on - strand, within Rru_A3151 at 3637.763 kb on + strand at 3637.763 kb on + strand at 3637.763 kb on + strand at 3638.054 kb on + strand, within Rru_A3152 at 3638.054 kb on + strand, within Rru_A3152 at 3638.054 kb on + strand, within Rru_A3152 at 3638.054 kb on + strand, within Rru_A3152 at 3638.054 kb on + strand, within Rru_A3152 at 3638.054 kb on + strand, within Rru_A3152 at 3638.055 kb on - strand, within Rru_A3152 at 3638.057 kb on + strand, within Rru_A3152 at 3638.057 kb on + strand, within Rru_A3152 at 3638.057 kb on + strand, within Rru_A3152 at 3638.058 kb on - strand, within Rru_A3152 at 3638.058 kb on - strand, within Rru_A3152 at 3638.123 kb on + strand, within Rru_A3152 at 3638.124 kb on - strand, within Rru_A3152 at 3638.271 kb on - strand, within Rru_A3152 at 3638.645 kb on + strand, within Rru_A3152 at 3638.645 kb on + strand, within Rru_A3152 at 3638.645 kb on + strand, within Rru_A3152 at 3638.645 kb on + strand, within Rru_A3152 at 3638.646 kb on - strand, within Rru_A3152 at 3638.646 kb on - strand, within Rru_A3152 at 3638.789 kb on + strand, within Rru_A3152 at 3639.235 kb on - strand, within Rru_A3153 at 3639.266 kb on - strand, within Rru_A3153 at 3639.678 kb on + strand, within Rru_A3153 at 3639.678 kb on + strand, within Rru_A3153
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 3,637,029 + Rru_A3151 0.57 -0.0 3,637,030 - Rru_A3151 0.57 -0.0 3,637,030 - Rru_A3151 0.57 -0.0 3,637,030 - Rru_A3151 0.57 -0.0 3,637,136 + Rru_A3151 0.62 -0.0 3,637,137 - Rru_A3151 0.62 +1.0 3,637,158 + Rru_A3151 0.63 -0.0 3,637,159 - Rru_A3151 0.63 -0.0 3,637,159 - Rru_A3151 0.63 -0.0 3,637,303 + Rru_A3151 0.70 +0.5 3,637,684 - Rru_A3151 0.89 +0.6 3,637,763 + -0.0 3,637,763 + -0.0 3,637,763 + -1.0 3,638,054 + Rru_A3152 0.16 -1.0 3,638,054 + Rru_A3152 0.16 -1.0 3,638,054 + Rru_A3152 0.16 -2.3 3,638,054 + Rru_A3152 0.16 -0.0 3,638,054 + Rru_A3152 0.16 -0.0 3,638,054 + Rru_A3152 0.16 -0.0 3,638,055 - Rru_A3152 0.16 +0.2 3,638,057 + Rru_A3152 0.16 -1.0 3,638,057 + Rru_A3152 0.16 -0.0 3,638,057 + Rru_A3152 0.16 -0.0 3,638,058 - Rru_A3152 0.16 -0.0 3,638,058 - Rru_A3152 0.16 -0.0 3,638,123 + Rru_A3152 0.22 -1.6 3,638,124 - Rru_A3152 0.23 -0.0 3,638,271 - Rru_A3152 0.37 -0.0 3,638,645 + Rru_A3152 0.73 -0.0 3,638,645 + Rru_A3152 0.73 -0.0 3,638,645 + Rru_A3152 0.73 -0.3 3,638,645 + Rru_A3152 0.73 -0.0 3,638,646 - Rru_A3152 0.73 -1.6 3,638,646 - Rru_A3152 0.73 -0.0 3,638,789 + Rru_A3152 0.87 -0.0 3,639,235 - Rru_A3153 0.11 -0.0 3,639,266 - Rru_A3153 0.12 -0.6 3,639,678 + Rru_A3153 0.27 -1.0 3,639,678 + Rru_A3153 0.27 +1.1
Or see this region's nucleotide sequence