Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3072

Experiment: acetate; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3071 and Rru_A3072 are separated by 100 nucleotidesRru_A3072 and Rru_A3073 overlap by 41 nucleotidesRru_A3073 and Rru_A3074 overlap by 4 nucleotides Rru_A3071: Rru_A3071 - Protein of unknown function DUF6, transmembrane (NCBI), at 3,535,202 to 3,536,137 _A3071 Rru_A3072: Rru_A3072 - MscS Mechanosensitive ion channel (NCBI), at 3,536,238 to 3,538,559 _A3072 Rru_A3073: Rru_A3073 - Phosphoesterase, PA-phosphatase related (NCBI), at 3,538,519 to 3,539,238 _A3073 Rru_A3074: Rru_A3074 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like (NCBI), at 3,539,235 to 3,540,776 _A3074 Position (kb) 3536 3537 3538 3539Strain fitness (log2 ratio) -1 0 1at 3535.370 kb on + strand, within Rru_A3071at 3535.736 kb on + strand, within Rru_A3071at 3535.736 kb on + strand, within Rru_A3071at 3535.736 kb on + strand, within Rru_A3071at 3535.736 kb on + strand, within Rru_A3071at 3535.737 kb on - strand, within Rru_A3071at 3535.737 kb on - strand, within Rru_A3071at 3535.737 kb on - strand, within Rru_A3071at 3535.737 kb on - strand, within Rru_A3071at 3535.737 kb on - strand, within Rru_A3071at 3535.738 kb on + strand, within Rru_A3071at 3535.899 kb on + strand, within Rru_A3071at 3535.900 kb on - strand, within Rru_A3071at 3535.912 kb on + strand, within Rru_A3071at 3535.913 kb on - strand, within Rru_A3071at 3536.251 kb on - strandat 3536.424 kb on - strandat 3536.729 kb on + strand, within Rru_A3072at 3536.729 kb on + strand, within Rru_A3072at 3536.730 kb on - strand, within Rru_A3072at 3536.730 kb on - strand, within Rru_A3072at 3536.730 kb on - strand, within Rru_A3072at 3536.730 kb on - strand, within Rru_A3072at 3536.730 kb on - strand, within Rru_A3072at 3536.927 kb on + strand, within Rru_A3072at 3536.927 kb on + strand, within Rru_A3072at 3536.928 kb on - strand, within Rru_A3072at 3536.928 kb on - strand, within Rru_A3072at 3537.030 kb on + strand, within Rru_A3072at 3537.030 kb on + strand, within Rru_A3072at 3537.036 kb on + strand, within Rru_A3072at 3537.036 kb on + strand, within Rru_A3072at 3537.036 kb on + strand, within Rru_A3072at 3537.036 kb on + strand, within Rru_A3072at 3537.036 kb on + strand, within Rru_A3072at 3537.036 kb on + strand, within Rru_A3072at 3537.036 kb on + strand, within Rru_A3072at 3537.037 kb on - strand, within Rru_A3072at 3537.037 kb on - strand, within Rru_A3072at 3537.037 kb on - strand, within Rru_A3072at 3537.038 kb on + strand, within Rru_A3072at 3537.038 kb on + strand, within Rru_A3072at 3537.038 kb on + strand, within Rru_A3072at 3537.038 kb on + strand, within Rru_A3072at 3537.039 kb on - strand, within Rru_A3072at 3537.039 kb on - strand, within Rru_A3072at 3537.039 kb on - strand, within Rru_A3072at 3537.039 kb on - strand, within Rru_A3072at 3537.155 kb on - strand, within Rru_A3072at 3537.155 kb on - strand, within Rru_A3072at 3537.155 kb on - strand, within Rru_A3072at 3537.309 kb on + strand, within Rru_A3072at 3537.309 kb on + strand, within Rru_A3072at 3537.309 kb on + strand, within Rru_A3072at 3537.309 kb on + strand, within Rru_A3072at 3537.309 kb on + strand, within Rru_A3072at 3537.309 kb on + strand, within Rru_A3072at 3537.310 kb on - strand, within Rru_A3072at 3537.310 kb on - strand, within Rru_A3072at 3537.310 kb on - strand, within Rru_A3072at 3537.345 kb on - strand, within Rru_A3072at 3537.345 kb on - strand, within Rru_A3072at 3537.401 kb on - strand, within Rru_A3072at 3537.714 kb on + strand, within Rru_A3072at 3537.714 kb on + strand, within Rru_A3072at 3537.771 kb on - strand, within Rru_A3072at 3538.004 kb on + strand, within Rru_A3072at 3538.071 kb on - strand, within Rru_A3072at 3538.129 kb on - strand, within Rru_A3072at 3538.129 kb on - strand, within Rru_A3072at 3538.148 kb on - strand, within Rru_A3072at 3538.224 kb on + strand, within Rru_A3072at 3538.406 kb on + strandat 3538.406 kb on + strandat 3539.349 kb on - strandat 3539.378 kb on + strandat 3539.379 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
remove
3,535,370 + Rru_A3071 0.18 -0.0
3,535,736 + Rru_A3071 0.57 +0.5
3,535,736 + Rru_A3071 0.57 -0.5
3,535,736 + Rru_A3071 0.57 +0.3
3,535,736 + Rru_A3071 0.57 -0.6
3,535,737 - Rru_A3071 0.57 -0.0
3,535,737 - Rru_A3071 0.57 -0.0
3,535,737 - Rru_A3071 0.57 -0.0
3,535,737 - Rru_A3071 0.57 -0.9
3,535,737 - Rru_A3071 0.57 +0.9
3,535,738 + Rru_A3071 0.57 -0.0
3,535,899 + Rru_A3071 0.74 -0.0
3,535,900 - Rru_A3071 0.75 -0.0
3,535,912 + Rru_A3071 0.76 +0.8
3,535,913 - Rru_A3071 0.76 +0.8
3,536,251 - +0.1
3,536,424 - -0.0
3,536,729 + Rru_A3072 0.21 -0.0
3,536,729 + Rru_A3072 0.21 +0.9
3,536,730 - Rru_A3072 0.21 +0.3
3,536,730 - Rru_A3072 0.21 +1.1
3,536,730 - Rru_A3072 0.21 +0.4
3,536,730 - Rru_A3072 0.21 +0.1
3,536,730 - Rru_A3072 0.21 +1.3
3,536,927 + Rru_A3072 0.30 +1.5
3,536,927 + Rru_A3072 0.30 -0.3
3,536,928 - Rru_A3072 0.30 -1.6
3,536,928 - Rru_A3072 0.30 +0.4
3,537,030 + Rru_A3072 0.34 +0.7
3,537,030 + Rru_A3072 0.34 +0.9
3,537,036 + Rru_A3072 0.34 +0.2
3,537,036 + Rru_A3072 0.34 +0.6
3,537,036 + Rru_A3072 0.34 +0.4
3,537,036 + Rru_A3072 0.34 +1.0
3,537,036 + Rru_A3072 0.34 -0.0
3,537,036 + Rru_A3072 0.34 -0.0
3,537,036 + Rru_A3072 0.34 -0.5
3,537,037 - Rru_A3072 0.34 +1.1
3,537,037 - Rru_A3072 0.34 -0.0
3,537,037 - Rru_A3072 0.34 +0.1
3,537,038 + Rru_A3072 0.34 +0.3
3,537,038 + Rru_A3072 0.34 -0.1
3,537,038 + Rru_A3072 0.34 -1.0
3,537,038 + Rru_A3072 0.34 +0.3
3,537,039 - Rru_A3072 0.34 +1.7
3,537,039 - Rru_A3072 0.34 +1.6
3,537,039 - Rru_A3072 0.34 -0.4
3,537,039 - Rru_A3072 0.34 -1.6
3,537,155 - Rru_A3072 0.39 -0.0
3,537,155 - Rru_A3072 0.39 -0.0
3,537,155 - Rru_A3072 0.39 +0.5
3,537,309 + Rru_A3072 0.46 +0.4
3,537,309 + Rru_A3072 0.46 +1.0
3,537,309 + Rru_A3072 0.46 +0.3
3,537,309 + Rru_A3072 0.46 -0.0
3,537,309 + Rru_A3072 0.46 +0.4
3,537,309 + Rru_A3072 0.46 -0.0
3,537,310 - Rru_A3072 0.46 +0.8
3,537,310 - Rru_A3072 0.46 -0.1
3,537,310 - Rru_A3072 0.46 -0.0
3,537,345 - Rru_A3072 0.48 +1.0
3,537,345 - Rru_A3072 0.48 +1.5
3,537,401 - Rru_A3072 0.50 +0.1
3,537,714 + Rru_A3072 0.64 -0.0
3,537,714 + Rru_A3072 0.64 -0.0
3,537,771 - Rru_A3072 0.66 +0.2
3,538,004 + Rru_A3072 0.76 +1.7
3,538,071 - Rru_A3072 0.79 +1.2
3,538,129 - Rru_A3072 0.81 -1.0
3,538,129 - Rru_A3072 0.81 -0.0
3,538,148 - Rru_A3072 0.82 +0.3
3,538,224 + Rru_A3072 0.86 +0.6
3,538,406 + -1.0
3,538,406 + +0.6
3,539,349 - -0.0
3,539,378 + -1.0
3,539,379 - +1.0

Or see this region's nucleotide sequence