Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3064

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
3,529,173	+		Rru_A3063	0.36	+1.1
3,529,173	+		Rru_A3063	0.36	-0.0
3,529,173	+		Rru_A3063	0.36	+1.1
3,529,174	-		Rru_A3063	0.36	+0.1
3,529,174	-		Rru_A3063	0.36	-0.7
3,529,272	+		Rru_A3063	0.44	-0.0
3,529,272	+		Rru_A3063	0.44	+1.0
3,529,272	+		Rru_A3063	0.44	-0.7
3,529,273	-		Rru_A3063	0.44	-0.0
3,529,273	-		Rru_A3063	0.44	-0.0
3,529,273	-		Rru_A3063	0.44	-0.0
3,529,273	-		Rru_A3063	0.44	-0.1
3,529,551	+		Rru_A3063	0.66	-0.0
3,529,551	+		Rru_A3063	0.66	-1.8
3,529,551	+		Rru_A3063	0.66	-0.0
3,529,551	+		Rru_A3063	0.66	-0.0
3,529,552	-		Rru_A3063	0.66	-0.0
3,529,552	-		Rru_A3063	0.66	-0.0
3,529,552	-		Rru_A3063	0.66	+0.2
3,529,553	+		Rru_A3063	0.66	-0.0
3,529,553	+		Rru_A3063	0.66	-0.0
3,529,553	+		Rru_A3063	0.66	-0.0
3,529,553	+		Rru_A3063	0.66	+0.8
3,529,553	+		Rru_A3063	0.66	-1.0
3,529,553	+		Rru_A3063	0.66	+0.9
3,529,554	-		Rru_A3063	0.66	+0.4
3,529,910	+				+0.1
3,529,910	+				-0.0
3,529,910	+				-0.0
3,529,923	-				-0.0
3,530,161	+				+1.1
3,530,161	+				-0.0
3,530,161	+				-0.0
3,530,161	+				-0.0
3,530,161	+				-0.0
3,530,162	-				-2.6
3,530,162	-				-0.0
3,530,162	-				+0.6
3,530,162	-				-1.2
3,530,162	-				-1.1
3,530,162	-				-3.5
3,530,162	-				-1.2
3,530,164	-				-1.3
3,530,179	+				-0.0
3,530,179	+				-0.6
3,530,179	+				-0.0
3,530,180	-				-1.0
3,530,180	-				-0.0
3,530,181	+				-0.5
3,530,182	-				-1.5
3,530,182	-				-2.3
3,530,182	-				-1.7
3,530,182	-				-0.0
3,530,182	-				-0.9
3,530,314	+		Rru_A3064	0.13	-1.8
3,530,314	+		Rru_A3064	0.13	-1.3
3,530,314	+		Rru_A3064	0.13	-1.9
3,530,315	-		Rru_A3064	0.13	-0.0
3,530,315	-		Rru_A3064	0.13	-1.4
3,530,315	-		Rru_A3064	0.13	-1.2
3,530,315	-		Rru_A3064	0.13	-0.0
3,530,419	+		Rru_A3064	0.20	-0.7
3,530,419	+		Rru_A3064	0.20	-1.8
3,530,524	+		Rru_A3064	0.26	-0.6
3,530,526	+		Rru_A3064	0.26	-1.8
3,530,526	+		Rru_A3064	0.26	-0.0
3,530,526	+		Rru_A3064	0.26	-0.9
3,530,527	-		Rru_A3064	0.26	-1.7
3,530,527	-		Rru_A3064	0.26	-1.4
3,530,786	-		Rru_A3064	0.41	-0.0
3,530,848	+		Rru_A3064	0.45	-1.9
3,530,848	+		Rru_A3064	0.45	-0.0
3,530,848	+		Rru_A3064	0.45	-3.9
3,530,849	-		Rru_A3064	0.45	-1.0
3,531,045	+		Rru_A3064	0.57	-0.0
3,531,046	-		Rru_A3064	0.57	-3.0
3,531,050	-		Rru_A3064	0.57	+0.3
3,531,050	-		Rru_A3064	0.57	-0.0
3,531,142	+		Rru_A3064	0.62	-0.0
3,531,142	+		Rru_A3064	0.62	-0.0
3,531,143	-		Rru_A3064	0.62	-2.3
3,531,144	+		Rru_A3064	0.62	-0.0
3,531,145	-		Rru_A3064	0.62	-0.0
3,531,262	+		Rru_A3064	0.69	-0.0
3,531,262	+		Rru_A3064	0.69	-0.0
3,531,262	+		Rru_A3064	0.69	-0.7
3,531,263	-		Rru_A3064	0.69	-5.2
3,531,263	-		Rru_A3064	0.69	-1.9
3,531,464	-		Rru_A3064	0.81	-1.1
3,531,464	-		Rru_A3064	0.81	-2.3
3,531,665	-				-3.2
3,531,665	-				-2.0
3,531,665	-				-1.6
3,531,665	-				-1.7
3,531,676	+				-0.0
3,531,871	+				-0.9
3,531,872	-				-0.0
3,531,872	-				-0.0
3,531,893	+				-0.3
3,531,893	+				+1.1
3,531,893	+				-0.0
3,531,893	+				+0.3
3,531,893	+				-1.0
3,531,894	-				-0.0
3,531,894	-				-0.0
3,531,894	-				+0.3
3,531,894	-				+0.9
3,532,020	+		Rru_A3065	0.17	-0.0
3,532,020	+		Rru_A3065	0.17	-0.0
3,532,020	+		Rru_A3065	0.17	+1.0
3,532,206	+		Rru_A3065	0.80	-0.0
3,532,206	+		Rru_A3065	0.80	+0.3
3,532,207	-		Rru_A3065	0.80	+1.0
3,532,269	+				+0.5
3,532,271	+				-0.1
3,532,271	+				-0.6
3,532,283	+				-0.0
3,532,284	-				-0.0
3,532,284	-				+2.1
3,532,681	+		Rru_A3066	0.42	-0.0
3,532,681	+		Rru_A3066	0.42	+0.8
3,532,682	-		Rru_A3066	0.42	-0.4
3,532,690	+		Rru_A3066	0.44	+1.0
3,532,691	-		Rru_A3066	0.44	-0.3
3,532,691	-		Rru_A3066	0.44	+0.2
3,532,756	+		Rru_A3066	0.55	+0.5