Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3062

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
3,525,498	+				-0.0
3,525,498	+				+0.2
3,525,499	-				-0.0
3,525,499	-				-0.1
3,525,499	-				+0.7
3,525,499	-				+0.4
3,525,573	+		Rru_A3061	0.13	-2.0
3,525,574	-		Rru_A3061	0.13	+0.7
3,525,580	+		Rru_A3061	0.14	-0.0
3,525,581	-		Rru_A3061	0.14	+1.2
3,525,582	+		Rru_A3061	0.14	-0.0
3,525,582	+		Rru_A3061	0.14	-0.0
3,525,582	+		Rru_A3061	0.14	-0.0
3,525,582	+		Rru_A3061	0.14	-0.0
3,525,583	-		Rru_A3061	0.14	-0.0
3,525,583	-		Rru_A3061	0.14	-0.1
3,525,583	-		Rru_A3061	0.14	-0.0
3,525,771	+		Rru_A3061	0.35	+0.4
3,525,772	-		Rru_A3061	0.35	-0.0
3,525,996	+		Rru_A3061	0.59	-0.0
3,525,996	+		Rru_A3061	0.59	-0.0
3,525,996	+		Rru_A3061	0.59	-0.2
3,525,996	+		Rru_A3061	0.59	+0.2
3,525,996	+		Rru_A3061	0.59	+0.1
3,525,996	+		Rru_A3061	0.59	-0.0
3,525,997	-		Rru_A3061	0.59	-0.0
3,525,997	-		Rru_A3061	0.59	+0.2
3,525,997	-		Rru_A3061	0.59	-0.0
3,525,997	-		Rru_A3061	0.59	+0.5
3,526,212	+		Rru_A3061	0.83	-0.0
3,526,212	+		Rru_A3061	0.83	+0.3
3,526,212	+		Rru_A3061	0.83	-1.6
3,526,212	+		Rru_A3061	0.83	+2.8
3,526,212	+		Rru_A3061	0.83	+0.5
3,526,213	-		Rru_A3061	0.83	-0.0
3,526,409	+				+1.1
3,526,409	+				-0.8
3,526,409	+				+0.2
3,526,409	+				-0.0
3,526,410	-				-0.1
3,526,475	+				+0.5
3,526,476	-				+0.1
3,526,476	-				-1.0
3,526,476	-				-0.0
3,526,541	+				+0.6
3,526,542	-				-1.6
3,526,542	-				-0.0
3,526,633	-				+0.2
3,526,781	+		Rru_A3062	0.15	-0.8
3,526,781	+		Rru_A3062	0.15	-1.3
3,526,781	+		Rru_A3062	0.15	-0.0
3,526,782	-		Rru_A3062	0.15	-0.0
3,526,782	-		Rru_A3062	0.15	-0.9
3,526,782	-		Rru_A3062	0.15	+0.1
3,526,782	-		Rru_A3062	0.15	-0.7
3,526,782	-		Rru_A3062	0.15	-0.8
3,527,073	+		Rru_A3062	0.30	-0.0
3,527,073	+		Rru_A3062	0.30	-0.2
3,527,073	+		Rru_A3062	0.30	-1.2
3,527,073	+		Rru_A3062	0.30	-0.0
3,527,073	+		Rru_A3062	0.30	-1.9
3,527,074	-		Rru_A3062	0.30	-0.0
3,527,074	-		Rru_A3062	0.30	+3.2
3,527,074	-		Rru_A3062	0.30	-0.4
3,527,074	-		Rru_A3062	0.30	+0.1
3,527,074	-		Rru_A3062	0.30	-2.3
3,527,074	-		Rru_A3062	0.30	-0.0
3,527,102	-		Rru_A3062	0.31	+0.9
3,527,158	-		Rru_A3062	0.34	-0.0
3,527,249	+		Rru_A3062	0.38	-0.0
3,527,249	+		Rru_A3062	0.38	+0.1
3,527,250	-		Rru_A3062	0.38	-0.0
3,527,250	-		Rru_A3062	0.38	-0.0
3,527,250	-		Rru_A3062	0.38	-0.0
3,527,250	-		Rru_A3062	0.38	+0.5
3,527,253	+		Rru_A3062	0.39	+0.2
3,527,254	-		Rru_A3062	0.39	-0.0
3,527,254	-		Rru_A3062	0.39	-0.5
3,527,336	+		Rru_A3062	0.43	-0.7
3,527,337	-		Rru_A3062	0.43	-1.1
3,527,337	-		Rru_A3062	0.43	-0.0
3,527,409	+		Rru_A3062	0.46	-0.4
3,527,409	+		Rru_A3062	0.46	-0.9
3,527,410	-		Rru_A3062	0.46	-0.0
3,527,410	-		Rru_A3062	0.46	-0.2
3,527,410	-		Rru_A3062	0.46	-1.5
3,527,454	+		Rru_A3062	0.49	-1.0
3,527,455	-		Rru_A3062	0.49	-0.0
3,527,455	-		Rru_A3062	0.49	-0.0
3,527,630	+		Rru_A3062	0.57	-0.0
3,527,724	-		Rru_A3062	0.62	-0.7
3,527,724	-		Rru_A3062	0.62	-0.0
3,527,878	-		Rru_A3062	0.70	-0.2
3,527,948	-		Rru_A3062	0.73	-0.0
3,527,948	-		Rru_A3062	0.73	-0.6
3,527,954	+		Rru_A3062	0.73	-0.6
3,527,954	+		Rru_A3062	0.73	+0.6
3,527,954	+		Rru_A3062	0.73	-1.1
3,527,955	-		Rru_A3062	0.73	-0.0
3,527,955	-		Rru_A3062	0.73	-0.2
3,528,051	+		Rru_A3062	0.78	-1.4
3,528,051	+		Rru_A3062	0.78	-0.7
3,528,051	+		Rru_A3062	0.78	-2.0
3,528,051	+		Rru_A3062	0.78	-0.5
3,528,051	+		Rru_A3062	0.78	-1.1
3,528,052	-		Rru_A3062	0.78	-0.0
3,528,052	-		Rru_A3062	0.78	-0.6
3,528,052	-		Rru_A3062	0.78	-0.0
3,528,052	-		Rru_A3062	0.78	-0.0
3,528,052	-		Rru_A3062	0.78	-0.3
3,528,052	-		Rru_A3062	0.78	-0.0
3,528,053	+		Rru_A3062	0.78	-1.8
3,528,053	+		Rru_A3062	0.78	-0.4
3,528,053	+		Rru_A3062	0.78	-1.0
3,528,053	+		Rru_A3062	0.78	-1.5
3,528,054	-		Rru_A3062	0.78	-0.0
3,528,054	-		Rru_A3062	0.78	+1.2
3,528,054	-		Rru_A3062	0.78	-0.0
3,528,054	-		Rru_A3062	0.78	-0.5
3,528,054	-		Rru_A3062	0.78	-0.0
3,528,072	-		Rru_A3062	0.79	-0.0
3,528,072	-		Rru_A3062	0.79	-1.1
3,528,149	+		Rru_A3062	0.83	-0.0
3,528,149	+		Rru_A3062	0.83	-1.6
3,528,150	-		Rru_A3062	0.83	-0.8
3,528,150	-		Rru_A3062	0.83	-0.3
3,528,150	-		Rru_A3062	0.83	-1.0
3,528,150	-		Rru_A3062	0.83	-0.0
3,528,417	-				-0.0
3,528,417	-				-1.2
3,528,439	-				-0.0
3,528,556	-				-0.0
3,528,702	+				+0.2
3,528,703	-				-0.0
3,528,730	+				+0.3
3,528,765	+				+0.8
3,528,813	+				-0.2
3,528,813	+				-0.0
3,528,813	+				-0.1
3,528,814	-				-1.2
3,528,814	-				+0.1
3,528,814	-				+1.3
3,528,939	+		Rru_A3063	0.18	+1.1
3,528,940	-		Rru_A3063	0.18	-0.2
3,529,002	+		Rru_A3063	0.23	-0.1
3,529,002	+		Rru_A3063	0.23	-1.6
3,529,002	+		Rru_A3063	0.23	-0.0
3,529,003	-		Rru_A3063	0.23	-0.0
3,529,003	-		Rru_A3063	0.23	-0.0
3,529,003	-		Rru_A3063	0.23	+1.1
3,529,003	-		Rru_A3063	0.23	+0.3
3,529,003	-		Rru_A3063	0.23	-0.0
3,529,173	+		Rru_A3063	0.36	+1.1
3,529,173	+		Rru_A3063	0.36	-0.0
3,529,173	+		Rru_A3063	0.36	+1.1
3,529,174	-		Rru_A3063	0.36	+0.1
3,529,174	-		Rru_A3063	0.36	-0.7
3,529,272	+		Rru_A3063	0.44	-0.0
3,529,272	+		Rru_A3063	0.44	+1.0
3,529,272	+		Rru_A3063	0.44	-0.7
3,529,273	-		Rru_A3063	0.44	-0.0
3,529,273	-		Rru_A3063	0.44	-0.0
3,529,273	-		Rru_A3063	0.44	-0.0
3,529,273	-		Rru_A3063	0.44	-0.1