Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3048

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
3,509,789	-		Rru_A3046	0.63	+1.1
3,509,805	+		Rru_A3046	0.65	-0.5
3,509,806	-		Rru_A3046	0.65	-0.0
3,509,806	-		Rru_A3046	0.65	+0.1
3,509,806	-		Rru_A3046	0.65	+0.9
3,509,985	+		Rru_A3046	0.85	-0.0
3,509,986	-		Rru_A3046	0.86	+0.5
3,510,000	+		Rru_A3046	0.87	+1.3
3,510,000	+		Rru_A3046	0.87	+1.2
3,510,053	-				-0.0
3,510,094	+				-0.0
3,510,094	+				-0.9
3,510,094	+				-0.0
3,510,095	-				+0.4
3,510,095	-				-1.0
3,510,095	-				+0.4
3,510,099	+				+0.1
3,510,099	+				-0.0
3,510,100	-				+0.9
3,510,100	-				+0.2
3,510,174	+				-0.0
3,510,177	-				-0.0
3,510,177	-				-0.0
3,510,177	-				+0.1
3,510,177	-				+0.0
3,510,255	+				+0.4
3,510,256	-				+1.4
3,510,326	+		Rru_A3047	0.18	+0.5
3,510,327	-		Rru_A3047	0.19	-0.0
3,510,327	-		Rru_A3047	0.19	-0.4
3,510,327	-		Rru_A3047	0.19	+0.5
3,510,327	-		Rru_A3047	0.19	-0.0
3,510,327	-		Rru_A3047	0.19	+0.9
3,510,329	+		Rru_A3047	0.19	+1.9
3,510,330	-		Rru_A3047	0.19	-1.3
3,510,425	+		Rru_A3047	0.41	+0.7
3,510,426	-		Rru_A3047	0.41	+0.3
3,510,681	-				+0.5
3,510,732	-				-0.0
3,510,971	+		Rru_A3048	0.16	-0.6
3,510,971	+		Rru_A3048	0.16	-1.0
3,510,972	-		Rru_A3048	0.16	-0.0
3,510,972	-		Rru_A3048	0.16	-1.0
3,510,989	+		Rru_A3048	0.17	-0.0
3,510,989	+		Rru_A3048	0.17	-0.0
3,510,989	+		Rru_A3048	0.17	-0.6
3,511,130	+		Rru_A3048	0.26	-0.0
3,511,131	-		Rru_A3048	0.26	-0.5
3,511,197	-		Rru_A3048	0.31	-1.3
3,511,197	-		Rru_A3048	0.31	+1.0
3,511,328	+		Rru_A3048	0.39	-0.0
3,511,328	+		Rru_A3048	0.39	-0.0
3,511,329	-		Rru_A3048	0.40	+0.8
3,511,431	+		Rru_A3048	0.46	+0.5
3,511,431	+		Rru_A3048	0.46	-0.0
3,511,431	+		Rru_A3048	0.46	+0.6
3,511,432	-		Rru_A3048	0.46	-1.0
3,511,432	-		Rru_A3048	0.46	+0.7
3,511,432	-		Rru_A3048	0.46	+0.3
3,511,432	-		Rru_A3048	0.46	+0.2
3,511,503	+		Rru_A3048	0.51	-0.0
3,511,505	+		Rru_A3048	0.51	+0.1
3,511,505	+		Rru_A3048	0.51	-0.0
3,511,506	-		Rru_A3048	0.51	+0.4
3,511,982	+		Rru_A3048	0.83	-0.1
3,511,982	+		Rru_A3048	0.83	-0.1
3,511,982	+		Rru_A3048	0.83	+0.6
3,511,982	+		Rru_A3048	0.83	-0.0
3,511,982	+		Rru_A3048	0.83	-0.0
3,511,983	-		Rru_A3048	0.83	-0.3
3,511,983	-		Rru_A3048	0.83	+0.1
3,511,983	-		Rru_A3048	0.83	-0.0
3,512,009	+		Rru_A3048	0.84	+1.0
3,512,030	+		Rru_A3048	0.86	-0.5
3,512,030	+		Rru_A3048	0.86	-0.0
3,512,030	+		Rru_A3048	0.86	-0.0
3,512,031	-		Rru_A3048	0.86	-1.2
3,512,055	-		Rru_A3048	0.87	-0.0
3,512,055	-		Rru_A3048	0.87	-0.0
3,512,246	+				+1.2
3,512,247	-				-0.1
3,512,247	-				+0.2
3,512,247	-				-0.0
3,512,571	+		Rru_A3049	0.24	-0.0
3,512,571	+		Rru_A3049	0.24	+0.1
3,512,571	+		Rru_A3049	0.24	+0.4
3,512,571	+		Rru_A3049	0.24	-0.0
3,512,571	+		Rru_A3049	0.24	+0.3
3,512,571	+		Rru_A3049	0.24	+0.4
3,512,572	-		Rru_A3049	0.24	-0.0
3,512,572	-		Rru_A3049	0.24	+0.6
3,512,572	-		Rru_A3049	0.24	-0.0
3,512,675	+		Rru_A3049	0.32	+1.0
3,512,675	+		Rru_A3049	0.32	+0.5
3,512,675	+		Rru_A3049	0.32	+1.3
3,512,676	-		Rru_A3049	0.32	-0.4
3,512,676	-		Rru_A3049	0.32	-0.2
3,512,738	+		Rru_A3049	0.37	-0.0
3,512,973	+		Rru_A3049	0.54	+1.2
3,512,974	-		Rru_A3049	0.54	-1.1
3,513,092	+		Rru_A3049	0.63	+0.4
3,513,092	+		Rru_A3049	0.63	+0.8
3,513,092	+		Rru_A3049	0.63	-1.0
3,513,092	+		Rru_A3049	0.63	-0.0
3,513,093	-		Rru_A3049	0.63	-0.0
3,513,188	+		Rru_A3049	0.70	-0.0
3,513,188	+		Rru_A3049	0.70	+0.3
3,513,188	+		Rru_A3049	0.70	+0.1
3,513,188	+		Rru_A3049	0.70	-0.0
3,513,188	+		Rru_A3049	0.70	-0.2
3,513,189	-		Rru_A3049	0.70	-0.0
3,513,189	-		Rru_A3049	0.70	-1.0
3,513,189	-		Rru_A3049	0.70	-0.3
3,513,189	-		Rru_A3049	0.70	-0.3
3,513,189	-		Rru_A3049	0.70	+0.8