Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3036

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
3,493,658	+		Rru_A3034	0.79	+0.0
3,493,658	+		Rru_A3034	0.79	-0.9
3,493,658	+		Rru_A3034	0.79	+0.5
3,493,659	-		Rru_A3034	0.79	+0.3
3,493,659	-		Rru_A3034	0.79	-0.2
3,493,659	-		Rru_A3034	0.79	+0.0
3,493,659	-		Rru_A3034	0.79	+0.0
3,493,659	-		Rru_A3034	0.79	+0.0
3,493,659	-		Rru_A3034	0.79	-1.6
3,493,660	+		Rru_A3034	0.80	+1.9
3,493,660	+		Rru_A3034	0.80	-1.0
3,493,660	+		Rru_A3034	0.80	-0.4
3,493,660	+		Rru_A3034	0.80	+0.0
3,493,660	+		Rru_A3034	0.80	+0.4
3,493,661	-		Rru_A3034	0.80	+0.0
3,493,661	-		Rru_A3034	0.80	-0.2
3,493,661	-		Rru_A3034	0.80	+0.6
3,493,661	-		Rru_A3034	0.80	+0.8
3,493,661	-		Rru_A3034	0.80	+0.1
3,493,661	-		Rru_A3034	0.80	+0.6
3,493,661	-		Rru_A3034	0.80	-0.4
3,493,962	+				+0.2
3,493,962	+				+0.0
3,493,962	+				+1.5
3,493,963	-				+1.2
3,493,963	-				+0.9
3,493,963	-				+0.6
3,494,053	+				+0.0
3,494,054	-				+0.0
3,494,123	+		Rru_A3035	0.16	+0.0
3,494,162	+		Rru_A3035	0.25	+0.7
3,494,163	-		Rru_A3035	0.25	+1.6
3,494,163	-		Rru_A3035	0.25	+0.5
3,494,163	-		Rru_A3035	0.25	+0.0
3,494,163	-		Rru_A3035	0.25	+0.3
3,494,163	-		Rru_A3035	0.25	+1.1
3,494,180	+		Rru_A3035	0.29	+1.2
3,494,180	+		Rru_A3035	0.29	+0.0
3,494,180	+		Rru_A3035	0.29	+0.0
3,494,180	+		Rru_A3035	0.29	-0.2
3,494,181	-		Rru_A3035	0.29	-1.0
3,494,181	-		Rru_A3035	0.29	+0.0
3,494,181	-		Rru_A3035	0.29	-0.1
3,494,181	-		Rru_A3035	0.29	+0.0
3,494,283	-		Rru_A3035	0.53	+0.5
3,494,366	+		Rru_A3035	0.72	+0.0
3,494,366	+		Rru_A3035	0.72	+0.0
3,494,367	-		Rru_A3035	0.72	+0.0
3,494,450	+				+0.0
3,494,450	+				+0.0
3,494,450	+				+0.5
3,494,450	+				-0.0
3,494,451	-				+0.0
3,494,452	+				+0.0
3,494,452	+				+1.1
3,494,524	-				+0.0
3,494,525	+				+1.2
3,494,526	-				+1.6
3,494,526	-				+0.0
3,494,526	-				+0.4
3,494,526	-				+1.5
3,494,977	-		Rru_A3036	0.16	+0.0
3,495,320	+		Rru_A3036	0.28	+0.0
3,495,320	+		Rru_A3036	0.28	+0.0
3,495,320	+		Rru_A3036	0.28	+0.7
3,495,320	+		Rru_A3036	0.28	+0.1
3,495,320	+		Rru_A3036	0.28	+0.0
3,495,321	-		Rru_A3036	0.28	-0.4
3,495,321	-		Rru_A3036	0.28	+2.1
3,495,321	-		Rru_A3036	0.28	+0.0
3,495,321	-		Rru_A3036	0.28	+0.0
3,495,321	-		Rru_A3036	0.28	+0.8
3,495,322	+		Rru_A3036	0.28	+1.0
3,495,323	-		Rru_A3036	0.28	+0.5
3,495,380	+		Rru_A3036	0.30	+0.3
3,495,380	+		Rru_A3036	0.30	+1.3
3,495,380	+		Rru_A3036	0.30	+0.1
3,495,380	+		Rru_A3036	0.30	-1.0
3,495,380	+		Rru_A3036	0.30	+0.0
3,495,380	+		Rru_A3036	0.30	+1.3
3,495,380	+		Rru_A3036	0.30	+2.6
3,495,381	-		Rru_A3036	0.30	+0.5
3,495,381	-		Rru_A3036	0.30	+0.0
3,495,381	-		Rru_A3036	0.30	+0.9
3,495,381	-		Rru_A3036	0.30	+0.0
3,495,381	-		Rru_A3036	0.30	-0.1
3,495,454	+		Rru_A3036	0.33	+0.0
3,495,455	-		Rru_A3036	0.33	+0.0
3,495,455	-		Rru_A3036	0.33	+0.0
3,495,485	+		Rru_A3036	0.34	+0.0
3,495,486	-		Rru_A3036	0.34	+1.5
3,495,486	-		Rru_A3036	0.34	+0.7
3,495,503	+		Rru_A3036	0.35	+0.6
3,495,503	+		Rru_A3036	0.35	+0.2
3,495,504	-		Rru_A3036	0.35	+0.0
3,495,504	-		Rru_A3036	0.35	+0.8
3,495,707	+		Rru_A3036	0.42	+0.0
3,495,708	-		Rru_A3036	0.42	-0.5
3,495,708	-		Rru_A3036	0.42	+0.0
3,495,836	+		Rru_A3036	0.47	-1.0
3,495,836	+		Rru_A3036	0.47	+0.0
3,495,836	+		Rru_A3036	0.47	+1.0
3,495,836	+		Rru_A3036	0.47	+0.4
3,495,836	+		Rru_A3036	0.47	+0.0
3,495,837	-		Rru_A3036	0.47	-1.1
3,495,838	+		Rru_A3036	0.47	+0.0
3,495,998	+		Rru_A3036	0.53	-0.3
3,495,998	+		Rru_A3036	0.53	+0.0
3,495,999	-		Rru_A3036	0.53	+0.6
3,495,999	-		Rru_A3036	0.53	+1.6
3,495,999	-		Rru_A3036	0.53	+0.7
3,496,703	+		Rru_A3036	0.78	+0.5
3,496,921	+		Rru_A3036	0.86	+0.0
3,496,922	-		Rru_A3036	0.86	+1.2
3,496,922	-		Rru_A3036	0.86	+0.6
3,497,105	+				+0.4
3,497,105	+				+0.2
3,497,105	+				+0.0
3,497,105	+				+0.2
3,497,106	-				+0.1
3,497,106	-				+0.0
3,497,106	-				-0.0
3,497,330	-				+0.0
3,497,481	-				+0.0
3,497,481	-				-0.1
3,497,481	-				+0.0
3,497,481	-				+0.0
3,497,481	-				+1.1
3,497,481	-				+0.1
3,497,696	+		Rru_A3037	0.13	+0.0
3,497,696	+		Rru_A3037	0.13	-1.0
3,497,697	-		Rru_A3037	0.13	+0.0
3,497,760	+		Rru_A3037	0.16	+0.0
3,497,895	+		Rru_A3037	0.24	+0.6
3,497,895	+		Rru_A3037	0.24	+0.0
3,497,896	-		Rru_A3037	0.24	+0.0
3,497,896	-		Rru_A3037	0.24	+1.0
3,497,896	-		Rru_A3037	0.24	-0.5
3,498,116	-		Rru_A3037	0.37	-1.0
3,498,116	-		Rru_A3037	0.37	+0.5
3,498,221	+		Rru_A3037	0.43	+0.4
3,498,221	+		Rru_A3037	0.43	+0.3
3,498,222	-		Rru_A3037	0.43	+0.0