Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3026

Experiment: acetate; Light intensity 9 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3024 and Rru_A3025 are separated by 66 nucleotidesRru_A3025 and Rru_A3026 are separated by 70 nucleotidesRru_A3026 and Rru_A3027 overlap by 8 nucleotides Rru_A3024: Rru_A3024 - Prolyl 4-hydroxylase, alpha subunit (NCBI), at 3,481,785 to 3,482,411 _A3024 Rru_A3025: Rru_A3025 - hypothetical protein (NCBI), at 3,482,478 to 3,482,792 _A3025 Rru_A3026: Rru_A3026 - HPr kinase (NCBI), at 3,482,863 to 3,483,885 _A3026 Rru_A3027: Rru_A3027 - Sulfotransferase (NCBI), at 3,483,878 to 3,484,744 _A3027 Position (kb) 3482 3483 3484Strain fitness (log2 ratio) -2 -1 0 1 2at 3482.144 kb on + strand, within Rru_A3024at 3482.144 kb on + strand, within Rru_A3024at 3482.144 kb on + strand, within Rru_A3024at 3482.144 kb on + strand, within Rru_A3024at 3482.144 kb on + strand, within Rru_A3024at 3482.145 kb on - strand, within Rru_A3024at 3482.145 kb on - strand, within Rru_A3024at 3482.145 kb on - strand, within Rru_A3024at 3482.145 kb on - strand, within Rru_A3024at 3482.145 kb on - strand, within Rru_A3024at 3482.151 kb on - strand, within Rru_A3024at 3482.151 kb on - strand, within Rru_A3024at 3482.205 kb on + strand, within Rru_A3024at 3482.205 kb on + strand, within Rru_A3024at 3482.205 kb on + strand, within Rru_A3024at 3482.205 kb on + strand, within Rru_A3024at 3482.205 kb on + strand, within Rru_A3024at 3482.205 kb on + strand, within Rru_A3024at 3482.206 kb on - strand, within Rru_A3024at 3482.206 kb on - strand, within Rru_A3024at 3482.206 kb on - strand, within Rru_A3024at 3482.206 kb on - strand, within Rru_A3024at 3482.206 kb on - strand, within Rru_A3024at 3482.206 kb on - strand, within Rru_A3024at 3482.206 kb on - strand, within Rru_A3024at 3482.209 kb on + strand, within Rru_A3024at 3482.209 kb on + strand, within Rru_A3024at 3482.209 kb on + strand, within Rru_A3024at 3482.210 kb on - strand, within Rru_A3024at 3482.210 kb on - strand, within Rru_A3024at 3482.210 kb on - strand, within Rru_A3024at 3482.210 kb on - strand, within Rru_A3024at 3482.284 kb on + strand, within Rru_A3024at 3482.284 kb on + strand, within Rru_A3024at 3482.285 kb on - strand, within Rru_A3024at 3482.389 kb on + strandat 3482.390 kb on - strandat 3482.390 kb on - strandat 3482.419 kb on + strandat 3482.420 kb on - strandat 3482.589 kb on + strand, within Rru_A3025at 3482.589 kb on + strand, within Rru_A3025at 3482.589 kb on + strand, within Rru_A3025at 3482.589 kb on + strand, within Rru_A3025at 3482.589 kb on + strand, within Rru_A3025at 3482.590 kb on - strand, within Rru_A3025at 3482.590 kb on - strand, within Rru_A3025at 3482.590 kb on - strand, within Rru_A3025at 3482.590 kb on - strand, within Rru_A3025at 3482.590 kb on - strand, within Rru_A3025at 3482.590 kb on - strand, within Rru_A3025at 3482.805 kb on + strandat 3482.820 kb on - strandat 3482.847 kb on + strandat 3482.980 kb on + strand, within Rru_A3026at 3482.980 kb on + strand, within Rru_A3026at 3482.980 kb on + strand, within Rru_A3026at 3482.980 kb on + strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.981 kb on - strand, within Rru_A3026at 3482.986 kb on + strand, within Rru_A3026at 3483.837 kb on + strandat 3483.914 kb on + strandat 3483.985 kb on + strand, within Rru_A3027at 3483.985 kb on + strand, within Rru_A3027at 3483.985 kb on + strand, within Rru_A3027at 3483.986 kb on - strand, within Rru_A3027at 3483.986 kb on - strand, within Rru_A3027at 3483.986 kb on - strand, within Rru_A3027at 3483.986 kb on - strand, within Rru_A3027at 3484.172 kb on - strand, within Rru_A3027at 3484.223 kb on + strand, within Rru_A3027at 3484.326 kb on + strand, within Rru_A3027at 3484.785 kb on + strandat 3484.786 kb on - strandat 3484.786 kb on - strandat 3484.786 kb on - strandat 3484.786 kb on - strandat 3484.786 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
remove
3,482,144 + Rru_A3024 0.57 +0.1
3,482,144 + Rru_A3024 0.57 +0.7
3,482,144 + Rru_A3024 0.57 +0.4
3,482,144 + Rru_A3024 0.57 +2.5
3,482,144 + Rru_A3024 0.57 +0.7
3,482,145 - Rru_A3024 0.57 -0.1
3,482,145 - Rru_A3024 0.57 -0.0
3,482,145 - Rru_A3024 0.57 +0.5
3,482,145 - Rru_A3024 0.57 +0.1
3,482,145 - Rru_A3024 0.57 -0.0
3,482,151 - Rru_A3024 0.58 +0.6
3,482,151 - Rru_A3024 0.58 -0.0
3,482,205 + Rru_A3024 0.67 -0.2
3,482,205 + Rru_A3024 0.67 +0.5
3,482,205 + Rru_A3024 0.67 +0.3
3,482,205 + Rru_A3024 0.67 -0.0
3,482,205 + Rru_A3024 0.67 -0.1
3,482,205 + Rru_A3024 0.67 +0.1
3,482,206 - Rru_A3024 0.67 -0.0
3,482,206 - Rru_A3024 0.67 -0.0
3,482,206 - Rru_A3024 0.67 -0.2
3,482,206 - Rru_A3024 0.67 -0.0
3,482,206 - Rru_A3024 0.67 -2.0
3,482,206 - Rru_A3024 0.67 -0.0
3,482,206 - Rru_A3024 0.67 -1.0
3,482,209 + Rru_A3024 0.68 +0.3
3,482,209 + Rru_A3024 0.68 -0.0
3,482,209 + Rru_A3024 0.68 -0.0
3,482,210 - Rru_A3024 0.68 -0.3
3,482,210 - Rru_A3024 0.68 -0.4
3,482,210 - Rru_A3024 0.68 +0.6
3,482,210 - Rru_A3024 0.68 -0.0
3,482,284 + Rru_A3024 0.80 +0.7
3,482,284 + Rru_A3024 0.80 -0.0
3,482,285 - Rru_A3024 0.80 +0.1
3,482,389 + +0.0
3,482,390 - +0.2
3,482,390 - +1.0
3,482,419 + -0.5
3,482,420 - -1.0
3,482,589 + Rru_A3025 0.35 +0.3
3,482,589 + Rru_A3025 0.35 +0.0
3,482,589 + Rru_A3025 0.35 +0.0
3,482,589 + Rru_A3025 0.35 +0.5
3,482,589 + Rru_A3025 0.35 +0.2
3,482,590 - Rru_A3025 0.36 +0.4
3,482,590 - Rru_A3025 0.36 +0.0
3,482,590 - Rru_A3025 0.36 +0.9
3,482,590 - Rru_A3025 0.36 +0.0
3,482,590 - Rru_A3025 0.36 +0.1
3,482,590 - Rru_A3025 0.36 +0.2
3,482,805 + +0.4
3,482,820 - +0.0
3,482,847 + +0.5
3,482,980 + Rru_A3026 0.11 +0.7
3,482,980 + Rru_A3026 0.11 +1.0
3,482,980 + Rru_A3026 0.11 +0.4
3,482,980 + Rru_A3026 0.11 +0.0
3,482,981 - Rru_A3026 0.12 +0.0
3,482,981 - Rru_A3026 0.12 +1.2
3,482,981 - Rru_A3026 0.12 +0.0
3,482,981 - Rru_A3026 0.12 +1.2
3,482,981 - Rru_A3026 0.12 +0.0
3,482,981 - Rru_A3026 0.12 +0.3
3,482,981 - Rru_A3026 0.12 +1.0
3,482,981 - Rru_A3026 0.12 +1.9
3,482,981 - Rru_A3026 0.12 +0.4
3,482,986 + Rru_A3026 0.12 +2.0
3,483,837 + +0.3
3,483,914 + +0.0
3,483,985 + Rru_A3027 0.12 +0.0
3,483,985 + Rru_A3027 0.12 +1.6
3,483,985 + Rru_A3027 0.12 +1.6
3,483,986 - Rru_A3027 0.12 +0.1
3,483,986 - Rru_A3027 0.12 +0.0
3,483,986 - Rru_A3027 0.12 +0.1
3,483,986 - Rru_A3027 0.12 +0.0
3,484,172 - Rru_A3027 0.34 +0.0
3,484,223 + Rru_A3027 0.40 +0.0
3,484,326 + Rru_A3027 0.52 +0.0
3,484,785 + +0.5
3,484,786 - +0.0
3,484,786 - +0.9
3,484,786 - +1.0
3,484,786 - +1.0
3,484,786 - +0.8

Or see this region's nucleotide sequence