Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3004

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
3,459,714	+		Rru_A3002	0.76	-0.0
3,459,715	-		Rru_A3002	0.76	+0.9
3,459,912	+				+0.7
3,459,972	+				+0.9
3,460,007	+				+1.3
3,460,007	+				+0.4
3,460,007	+				+0.4
3,460,008	-				-0.0
3,460,008	-				-1.0
3,460,008	-				+0.8
3,460,008	-				+1.0
3,460,008	-				-0.0
3,460,008	-				-0.0
3,460,008	-				-1.0
3,460,008	-				-0.0
3,460,008	-				-0.0
3,460,009	+				-0.0
3,460,009	+				-0.0
3,460,009	+				-0.0
3,460,009	+				-0.2
3,460,009	+				-0.0
3,460,026	-				+0.8
3,460,150	-		Rru_A3003	0.24	-0.0
3,460,204	+		Rru_A3003	0.33	-0.0
3,460,205	-		Rru_A3003	0.33	+0.4
3,460,367	+		Rru_A3003	0.58	+1.3
3,460,367	+		Rru_A3003	0.58	+1.6
3,460,367	+		Rru_A3003	0.58	-0.0
3,460,368	-		Rru_A3003	0.58	+1.3
3,460,368	-		Rru_A3003	0.58	-0.0
3,460,424	+		Rru_A3003	0.66	-0.0
3,460,424	+		Rru_A3003	0.66	+1.5
3,460,425	-		Rru_A3003	0.67	-0.6
3,460,425	-		Rru_A3003	0.67	+0.3
3,460,602	-				-0.0
3,460,641	-				+1.2
3,460,816	+				+1.3
3,460,816	+				-0.4
3,460,816	+				-0.8
3,460,817	-				-0.0
3,461,025	+		Rru_A3004	0.26	-0.1
3,461,025	+		Rru_A3004	0.26	-1.0
3,461,026	-		Rru_A3004	0.26	+1.0
3,461,026	-		Rru_A3004	0.26	+0.9
3,461,058	+		Rru_A3004	0.28	+0.7
3,461,058	+		Rru_A3004	0.28	-0.0
3,461,059	-		Rru_A3004	0.28	+0.9
3,461,059	-		Rru_A3004	0.28	+0.1
3,461,059	-		Rru_A3004	0.28	+0.6
3,461,059	-		Rru_A3004	0.28	+0.7
3,461,221	-		Rru_A3004	0.41	-0.0
3,461,313	+		Rru_A3004	0.49	-0.0
3,461,313	+		Rru_A3004	0.49	-0.1
3,461,427	+		Rru_A3004	0.58	+1.1
3,461,427	+		Rru_A3004	0.58	-0.6
3,461,427	+		Rru_A3004	0.58	+0.1
3,461,427	+		Rru_A3004	0.58	-0.0
3,461,427	+		Rru_A3004	0.58	+0.2
3,461,428	-		Rru_A3004	0.58	+0.2
3,461,518	-		Rru_A3004	0.65	-0.0
3,461,518	-		Rru_A3004	0.65	-1.6
3,461,559	+		Rru_A3004	0.69	-0.6
3,461,559	+		Rru_A3004	0.69	+2.6
3,461,577	+		Rru_A3004	0.70	-0.0
3,461,577	+		Rru_A3004	0.70	+0.5
3,461,577	+		Rru_A3004	0.70	+0.3
3,461,577	+		Rru_A3004	0.70	-0.0
3,461,578	-		Rru_A3004	0.70	+0.5
3,461,578	-		Rru_A3004	0.70	-0.0
3,461,578	-		Rru_A3004	0.70	-0.0
3,461,578	-		Rru_A3004	0.70	+0.6
3,461,617	-		Rru_A3004	0.73	-0.0
3,461,617	-		Rru_A3004	0.73	-0.0
3,461,721	+		Rru_A3004	0.82	+0.3
3,461,721	+		Rru_A3004	0.82	-0.4
3,461,722	-		Rru_A3004	0.82	-0.2
3,461,722	-		Rru_A3004	0.82	+1.6
3,461,722	-		Rru_A3004	0.82	+0.7
3,461,722	-		Rru_A3004	0.82	+0.4
3,461,739	+		Rru_A3004	0.83	-0.0
3,461,788	-		Rru_A3004	0.87	-0.7
3,461,788	-		Rru_A3004	0.87	-1.0
3,461,833	+				-0.0
3,461,950	+				+0.6
3,461,950	+				-0.0
3,461,950	+				+0.1
3,461,950	+				+0.3
3,461,950	+				+0.6
3,461,950	+				+0.6
3,461,950	+				+0.7
3,461,951	-				-1.6
3,461,951	-				-0.3
3,461,951	-				-0.0
3,461,951	-				+1.0
3,461,951	-				+0.1
3,461,951	-				-0.0
3,461,951	-				-0.0
3,461,952	+				-1.6
3,461,952	+				+0.0
3,461,952	+				+1.1
3,462,009	+				+0.6
3,462,098	+				-1.0
3,462,098	+				-0.0
3,462,098	+				+2.3
3,462,098	+				-0.0
3,462,099	-				+0.4
3,462,099	-				-0.0
3,462,099	-				-0.0
3,462,099	-				+1.2
3,462,099	-				-0.4
3,462,129	+				-0.0
3,462,412	+		Rru_A3005	0.53	-1.0
3,462,412	+		Rru_A3005	0.53	+1.0
3,462,412	+		Rru_A3005	0.53	-0.0
3,462,412	+		Rru_A3005	0.53	-0.0
3,462,413	-		Rru_A3005	0.53	-0.0
3,462,413	-		Rru_A3005	0.53	+1.2
3,462,413	-		Rru_A3005	0.53	+0.6
3,462,413	-		Rru_A3005	0.53	+0.6
3,462,413	-		Rru_A3005	0.53	+0.2
3,462,413	-		Rru_A3005	0.53	-0.0
3,462,418	+		Rru_A3005	0.55	+1.2
3,462,418	+		Rru_A3005	0.55	+2.1
3,462,418	+		Rru_A3005	0.55	-0.0
3,462,418	+		Rru_A3005	0.55	-2.0
3,462,418	+		Rru_A3005	0.55	-0.0
3,462,419	-		Rru_A3005	0.55	+0.4
3,462,419	-		Rru_A3005	0.55	+0.3
3,462,419	-		Rru_A3005	0.55	-0.0
3,462,635	+				+0.9
3,462,635	+				-0.0
3,462,636	-				+0.7
3,462,748	+				-0.0
3,462,748	+				+0.2
3,462,748	+				-0.0
3,462,748	+				-0.0
3,462,748	+				+1.0
3,462,749	-				-0.0
3,462,749	-				-0.0
3,462,749	-				+1.9
3,462,853	+		Rru_A3006	0.10	-1.0
3,462,853	+		Rru_A3006	0.10	+0.6