Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2950 and Rru_A2951 are separated by 146 nucleotides Rru_A2951 and Rru_A2952 overlap by 4 nucleotides Rru_A2952 and Rru_A2953 are separated by 69 nucleotides
Rru_A2950: Rru_A2950 - Farnesyltranstransferase (NCBI), at 3,399,890 to 3,400,972
_A2950
Rru_A2951: Rru_A2951 - hypothetical protein (NCBI), at 3,401,119 to 3,401,331
_A2951
Rru_A2952: Rru_A2952 - Methyltransferase small (NCBI), at 3,401,328 to 3,402,110
_A2952
Rru_A2953: Rru_A2953 - hypothetical protein (NCBI), at 3,402,180 to 3,402,467
_A2953
Position (kb)
3401
3402 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3400.973 kb on - strand at 3400.973 kb on - strand at 3400.973 kb on - strand at 3401.025 kb on - strand at 3401.166 kb on + strand, within Rru_A2951 at 3401.167 kb on - strand, within Rru_A2951 at 3401.427 kb on + strand, within Rru_A2952 at 3401.429 kb on + strand, within Rru_A2952 at 3401.429 kb on + strand, within Rru_A2952 at 3401.429 kb on + strand, within Rru_A2952 at 3401.430 kb on - strand, within Rru_A2952 at 3401.430 kb on - strand, within Rru_A2952 at 3401.430 kb on - strand, within Rru_A2952 at 3402.040 kb on - strand at 3402.040 kb on - strand at 3402.042 kb on - strand at 3402.109 kb on - strand at 3402.188 kb on + strand at 3402.188 kb on + strand at 3402.188 kb on + strand at 3402.188 kb on + strand at 3402.188 kb on + strand at 3402.189 kb on - strand at 3402.189 kb on - strand at 3402.189 kb on - strand at 3402.189 kb on - strand at 3402.203 kb on + strand at 3402.203 kb on + strand at 3402.203 kb on + strand at 3402.204 kb on - strand at 3402.204 kb on - strand at 3402.204 kb on - strand at 3402.204 kb on - strand at 3402.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 3,400,973 - -0.0 3,400,973 - -0.0 3,400,973 - -0.0 3,401,025 - -0.0 3,401,166 + Rru_A2951 0.22 -0.0 3,401,167 - Rru_A2951 0.23 -2.3 3,401,427 + Rru_A2952 0.13 -1.0 3,401,429 + Rru_A2952 0.13 -2.0 3,401,429 + Rru_A2952 0.13 -0.0 3,401,429 + Rru_A2952 0.13 -0.0 3,401,430 - Rru_A2952 0.13 -0.0 3,401,430 - Rru_A2952 0.13 -0.0 3,401,430 - Rru_A2952 0.13 -1.6 3,402,040 - -0.0 3,402,040 - -0.0 3,402,042 - -0.0 3,402,109 - +0.5 3,402,188 + -0.0 3,402,188 + -0.0 3,402,188 + -0.0 3,402,188 + -1.6 3,402,188 + +0.9 3,402,189 - -0.0 3,402,189 - -0.0 3,402,189 - -2.8 3,402,189 - +0.6 3,402,203 + -0.5 3,402,203 + +0.4 3,402,203 + -0.0 3,402,204 - -0.0 3,402,204 - -0.0 3,402,204 - +0.2 3,402,204 - -0.0 3,402,204 - +0.5
Or see this region's nucleotide sequence