Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2951
Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | acetate; Light intensity 9 uM |
---|---|---|---|---|---|
remove | |||||
3,400,973 | - | -0.0 | |||
3,400,973 | - | -0.0 | |||
3,400,973 | - | -0.0 | |||
3,401,025 | - | -0.0 | |||
3,401,166 | + | Rru_A2951 | 0.22 | -0.0 | |
3,401,167 | - | Rru_A2951 | 0.23 | -2.3 | |
3,401,427 | + | Rru_A2952 | 0.13 | -1.0 | |
3,401,429 | + | Rru_A2952 | 0.13 | -2.0 | |
3,401,429 | + | Rru_A2952 | 0.13 | -0.0 | |
3,401,429 | + | Rru_A2952 | 0.13 | -0.0 | |
3,401,430 | - | Rru_A2952 | 0.13 | -0.0 | |
3,401,430 | - | Rru_A2952 | 0.13 | -0.0 | |
3,401,430 | - | Rru_A2952 | 0.13 | -1.6 | |
3,402,040 | - | -0.0 | |||
3,402,040 | - | -0.0 | |||
3,402,042 | - | -0.0 | |||
3,402,109 | - | +0.5 | |||
3,402,188 | + | -0.0 | |||
3,402,188 | + | -0.0 | |||
3,402,188 | + | -0.0 | |||
3,402,188 | + | -1.6 | |||
3,402,188 | + | +0.9 | |||
3,402,189 | - | -0.0 | |||
3,402,189 | - | -0.0 | |||
3,402,189 | - | -2.8 | |||
3,402,189 | - | +0.6 | |||
3,402,203 | + | -0.5 | |||
3,402,203 | + | +0.4 | |||
3,402,203 | + | -0.0 | |||
3,402,204 | - | -0.0 | |||
3,402,204 | - | -0.0 | |||
3,402,204 | - | +0.2 | |||
3,402,204 | - | -0.0 | |||
3,402,204 | - | +0.5 |
Or see this region's nucleotide sequence