Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2916

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2914 and Rru_A2915 are separated by 92 nucleotidesRru_A2915 and Rru_A2916 are separated by 89 nucleotidesRru_A2916 and Rru_A2917 are separated by 1 nucleotidesRru_A2917 and Rru_A2918 are separated by 266 nucleotides Rru_A2914: Rru_A2914 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 3,356,837 to 3,358,438 _A2914 Rru_A2915: Rru_A2915 - hypothetical protein (NCBI), at 3,358,531 to 3,358,908 _A2915 Rru_A2916: Rru_A2916 - 4'-phosphopantetheinyl transferase (NCBI), at 3,358,998 to 3,359,723 _A2916 Rru_A2917: Rru_A2917 - hypothetical protein (NCBI), at 3,359,725 to 3,359,979 _A2917 Rru_A2918: Rru_A2918 - hypothetical protein (NCBI), at 3,360,246 to 3,360,761 _A2918 Position (kb) 3358 3359 3360Strain fitness (log2 ratio) -1 0 1 2at 3358.014 kb on - strand, within Rru_A2914at 3358.041 kb on + strand, within Rru_A2914at 3358.041 kb on + strand, within Rru_A2914at 3358.151 kb on + strand, within Rru_A2914at 3358.152 kb on - strand, within Rru_A2914at 3358.152 kb on - strand, within Rru_A2914at 3358.152 kb on - strand, within Rru_A2914at 3358.485 kb on - strandat 3358.485 kb on - strandat 3358.516 kb on + strandat 3358.517 kb on - strandat 3358.517 kb on - strandat 3358.517 kb on - strandat 3358.517 kb on - strandat 3358.770 kb on + strand, within Rru_A2915at 3358.849 kb on + strand, within Rru_A2915at 3358.850 kb on - strand, within Rru_A2915at 3358.850 kb on - strand, within Rru_A2915at 3358.850 kb on - strand, within Rru_A2915at 3358.850 kb on - strand, within Rru_A2915at 3358.864 kb on + strand, within Rru_A2915at 3358.864 kb on + strand, within Rru_A2915at 3358.865 kb on - strand, within Rru_A2915at 3358.865 kb on - strand, within Rru_A2915at 3358.865 kb on - strand, within Rru_A2915at 3358.865 kb on - strand, within Rru_A2915at 3359.902 kb on - strand, within Rru_A2917at 3359.964 kb on + strandat 3360.004 kb on + strandat 3360.028 kb on + strandat 3360.028 kb on + strandat 3360.029 kb on - strandat 3360.076 kb on - strandat 3360.130 kb on + strandat 3360.131 kb on - strandat 3360.149 kb on - strandat 3360.222 kb on + strandat 3360.245 kb on + strandat 3360.246 kb on - strandat 3360.246 kb on - strandat 3360.246 kb on - strandat 3360.288 kb on + strandat 3360.323 kb on + strand, within Rru_A2918at 3360.374 kb on + strand, within Rru_A2918at 3360.528 kb on - strand, within Rru_A2918at 3360.701 kb on + strand, within Rru_A2918at 3360.701 kb on + strand, within Rru_A2918at 3360.702 kb on - strand, within Rru_A2918at 3360.702 kb on - strand, within Rru_A2918

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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3,358,014 - Rru_A2914 0.73 +0.0
3,358,041 + Rru_A2914 0.75 -0.8
3,358,041 + Rru_A2914 0.75 +0.0
3,358,151 + Rru_A2914 0.82 +0.0
3,358,152 - Rru_A2914 0.82 -0.4
3,358,152 - Rru_A2914 0.82 +0.1
3,358,152 - Rru_A2914 0.82 -0.4
3,358,485 - +0.1
3,358,485 - -0.7
3,358,516 + -0.0
3,358,517 - +0.0
3,358,517 - -0.9
3,358,517 - +0.0
3,358,517 - -0.4
3,358,770 + Rru_A2915 0.63 -0.3
3,358,849 + Rru_A2915 0.84 +0.6
3,358,850 - Rru_A2915 0.84 +0.5
3,358,850 - Rru_A2915 0.84 +2.2
3,358,850 - Rru_A2915 0.84 +0.2
3,358,850 - Rru_A2915 0.84 +0.1
3,358,864 + Rru_A2915 0.88 +0.9
3,358,864 + Rru_A2915 0.88 +0.3
3,358,865 - Rru_A2915 0.88 +0.3
3,358,865 - Rru_A2915 0.88 +1.1
3,358,865 - Rru_A2915 0.88 +0.7
3,358,865 - Rru_A2915 0.88 +0.5
3,359,902 - Rru_A2917 0.69 +0.0
3,359,964 + -0.0
3,360,004 + +0.0
3,360,028 + +0.0
3,360,028 + +0.9
3,360,029 - +0.8
3,360,076 - +0.0
3,360,130 + -0.1
3,360,131 - +1.2
3,360,149 - +0.0
3,360,222 + -1.0
3,360,245 + -1.6
3,360,246 - +2.7
3,360,246 - +0.3
3,360,246 - +0.0
3,360,288 + +0.0
3,360,323 + Rru_A2918 0.15 +0.7
3,360,374 + Rru_A2918 0.25 +0.4
3,360,528 - Rru_A2918 0.55 +0.0
3,360,701 + Rru_A2918 0.88 +0.0
3,360,701 + Rru_A2918 0.88 +0.0
3,360,702 - Rru_A2918 0.88 +1.0
3,360,702 - Rru_A2918 0.88 +0.0

Or see this region's nucleotide sequence