Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2905

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
3,348,405	-		Rru_A2904	0.27	+0.6
3,348,415	+		Rru_A2904	0.30	+0.3
3,348,415	+		Rru_A2904	0.30	-1.0
3,348,415	+		Rru_A2904	0.30	-0.3
3,348,415	+		Rru_A2904	0.30	-0.0
3,348,415	+		Rru_A2904	0.30	-0.0
3,348,416	-		Rru_A2904	0.30	-1.1
3,348,416	-		Rru_A2904	0.30	+0.1
3,348,484	+		Rru_A2904	0.47	-0.0
3,348,484	+		Rru_A2904	0.47	-0.0
3,348,484	+		Rru_A2904	0.47	+0.7
3,348,861	-				+0.9
3,348,916	+				-0.0
3,348,917	-				-0.0
3,348,949	+				-0.0
3,348,949	+				+0.9
3,348,949	+				+0.5
3,348,950	-				-1.0
3,348,950	-				-0.0
3,348,950	-				+0.2
3,348,950	-				-0.0
3,348,950	-				+0.8
3,348,992	+				-0.2
3,348,995	-				+0.2
3,348,995	-				+1.3
3,348,995	-				+0.1
3,349,001	+				-0.0
3,349,068	+				-1.3
3,349,101	+				-0.1
3,349,101	+				+0.7
3,349,101	+				+0.5
3,349,102	-				-0.6
3,349,163	+				-0.0
3,349,288	-				-0.3
3,349,409	-				+0.1
3,349,409	-				+1.4
3,349,409	-				-0.0
3,349,456	+		Rru_A2905	0.13	+0.6
3,349,456	+		Rru_A2905	0.13	+0.3
3,349,457	-		Rru_A2905	0.13	-0.0
3,349,457	-		Rru_A2905	0.13	-0.2
3,349,471	+		Rru_A2905	0.15	-0.0
3,349,472	-		Rru_A2905	0.15	-0.0
3,349,472	-		Rru_A2905	0.15	+0.7
3,349,472	-		Rru_A2905	0.15	-0.0
3,349,523	-		Rru_A2905	0.20	-0.4
3,349,671	+		Rru_A2905	0.35	+1.0
3,349,672	-		Rru_A2905	0.35	+0.1
3,349,672	-		Rru_A2905	0.35	+0.3
3,349,973	-		Rru_A2905	0.66	-0.0
3,349,973	-		Rru_A2905	0.66	+0.5
3,349,973	-		Rru_A2905	0.66	-0.0
3,350,168	+		Rru_A2905	0.86	+0.7
3,350,168	+		Rru_A2905	0.86	-0.0
3,350,168	+		Rru_A2905	0.86	+3.5
3,350,168	+		Rru_A2905	0.86	-0.0
3,350,168	+		Rru_A2905	0.86	+0.6
3,350,169	-		Rru_A2905	0.86	+1.4
3,350,169	-		Rru_A2905	0.86	-1.0
3,350,169	-		Rru_A2905	0.86	+0.4
3,350,169	-		Rru_A2905	0.86	+1.1
3,350,169	-		Rru_A2905	0.86	+0.9
3,350,169	-		Rru_A2905	0.86	+2.2
3,350,383	-				-0.9
3,350,401	-				+0.7
3,350,679	-		Rru_A2906	0.36	-0.0
3,350,679	-		Rru_A2906	0.36	-0.0
3,350,816	+		Rru_A2906	0.63	-0.0
3,350,817	-		Rru_A2906	0.64	-0.0
3,350,834	+		Rru_A2906	0.67	-0.0
3,350,834	+		Rru_A2906	0.67	-0.0
3,350,835	-		Rru_A2906	0.67	-0.2
3,350,876	+		Rru_A2906	0.75	-1.0
3,350,876	+		Rru_A2906	0.75	+0.5
3,350,876	+		Rru_A2906	0.75	+0.8
3,350,876	+		Rru_A2906	0.75	+1.5
3,350,877	-		Rru_A2906	0.75	-0.0
3,350,877	-		Rru_A2906	0.75	+0.8
3,350,877	-		Rru_A2906	0.75	+0.3
3,350,877	-		Rru_A2906	0.75	-0.1
3,350,877	-		Rru_A2906	0.75	-1.6
3,350,877	-		Rru_A2906	0.75	-0.0
3,350,918	-		Rru_A2906	0.83	-3.2
3,350,989	-				-0.0
3,351,300	+				-0.0
3,351,300	+				+1.5
3,351,300	+				+2.6