Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2886

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
3,328,031	+		Rru_A2885	0.46	-0.0
3,328,031	+		Rru_A2885	0.46	-2.5
3,328,031	+		Rru_A2885	0.46	-1.6
3,328,031	+		Rru_A2885	0.46	-1.8
3,328,031	+		Rru_A2885	0.46	-0.6
3,328,032	-		Rru_A2885	0.46	-2.5
3,328,032	-		Rru_A2885	0.46	-3.4
3,328,032	-		Rru_A2885	0.46	-0.0
3,328,032	-		Rru_A2885	0.46	-2.8
3,328,115	+		Rru_A2885	0.53	-2.1
3,328,132	+		Rru_A2885	0.55	-3.8
3,328,132	+		Rru_A2885	0.55	-2.3
3,328,132	+		Rru_A2885	0.55	-2.2
3,328,133	-		Rru_A2885	0.55	-2.8
3,328,133	-		Rru_A2885	0.55	-2.9
3,328,271	+		Rru_A2885	0.66	-0.8
3,328,271	+		Rru_A2885	0.66	-2.5
3,328,272	-		Rru_A2885	0.66	-2.4
3,328,373	+		Rru_A2885	0.75	-2.8
3,328,373	+		Rru_A2885	0.75	-0.0
3,328,373	+		Rru_A2885	0.75	-2.0
3,328,374	-		Rru_A2885	0.75	-0.0
3,328,374	-		Rru_A2885	0.75	-3.9
3,328,374	-		Rru_A2885	0.75	-2.8
3,328,374	-		Rru_A2885	0.75	-2.1
3,328,374	-		Rru_A2885	0.75	-0.7
3,328,374	-		Rru_A2885	0.75	-3.1
3,328,375	+		Rru_A2885	0.75	-2.2
3,328,375	+		Rru_A2885	0.75	+0.3
3,328,375	+		Rru_A2885	0.75	-0.0
3,328,375	+		Rru_A2885	0.75	-2.5
3,328,375	+		Rru_A2885	0.75	-2.3
3,328,375	+		Rru_A2885	0.75	-1.9
3,328,375	+		Rru_A2885	0.75	-1.1
3,328,376	-		Rru_A2885	0.75	-3.3
3,328,376	-		Rru_A2885	0.75	-2.4
3,328,376	-		Rru_A2885	0.75	-2.9
3,328,376	-		Rru_A2885	0.75	-1.0
3,328,376	-		Rru_A2885	0.75	-4.5
3,328,577	+				-1.3
3,328,577	+				-1.0
3,328,577	+				-0.6
3,328,577	+				-0.6
3,328,577	+				-0.8
3,328,577	+				-0.6
3,328,578	-				-0.0
3,328,578	-				-0.0
3,328,616	+				-1.3
3,328,616	+				-1.5
3,328,617	-				-0.0
3,328,617	-				-2.2
3,328,617	-				-3.0
3,328,617	-				-3.4
3,328,617	-				-1.7
3,328,617	-				-4.1
3,328,888	+				-1.9
3,328,940	+				-3.1
3,328,940	+				-2.8
3,328,940	+				-3.8
3,328,941	-				-2.6
3,328,941	-				-0.0
3,328,941	-				-0.0
3,328,941	-				-1.7
3,328,942	+				-2.1
3,328,942	+				-2.8
3,329,078	+		Rru_A2886	0.10	-1.9
3,329,079	-		Rru_A2886	0.10	-3.6
3,329,104	+		Rru_A2886	0.11	-0.0
3,329,140	-		Rru_A2886	0.12	-2.8
3,329,309	+		Rru_A2886	0.17	-2.7
3,329,310	-		Rru_A2886	0.17	-2.4
3,329,310	-		Rru_A2886	0.17	-3.4
3,329,393	+		Rru_A2886	0.20	-2.5
3,329,393	+		Rru_A2886	0.20	-2.9
3,329,394	-		Rru_A2886	0.20	-0.5
3,329,476	+		Rru_A2886	0.22	-2.2
3,329,477	-		Rru_A2886	0.22	-0.0
3,329,528	+		Rru_A2886	0.24	-3.5
3,329,528	+		Rru_A2886	0.24	-0.0
3,329,529	-		Rru_A2886	0.24	-3.1
3,329,735	+		Rru_A2886	0.30	-0.0
3,329,736	-		Rru_A2886	0.30	-4.0
3,329,737	+		Rru_A2886	0.30	-1.0
3,329,737	+		Rru_A2886	0.30	-4.2
3,329,737	+		Rru_A2886	0.30	-0.0
3,329,738	-		Rru_A2886	0.30	-1.4
3,329,738	-		Rru_A2886	0.30	-1.7
3,329,738	-		Rru_A2886	0.30	-2.0
3,329,738	-		Rru_A2886	0.30	-2.1
3,329,738	-		Rru_A2886	0.30	-2.3
3,329,738	-		Rru_A2886	0.30	-2.4
3,329,804	+		Rru_A2886	0.33	-2.4
3,329,804	+		Rru_A2886	0.33	-1.8
3,329,804	+		Rru_A2886	0.33	-0.0
3,329,805	-		Rru_A2886	0.33	-2.2
3,329,805	-		Rru_A2886	0.33	-3.0
3,329,805	-		Rru_A2886	0.33	-0.0
3,330,120	-		Rru_A2886	0.42	+1.4
3,330,122	+		Rru_A2886	0.42	-3.3
3,330,122	+		Rru_A2886	0.42	-0.0
3,330,122	+		Rru_A2886	0.42	-1.4
3,330,122	+		Rru_A2886	0.42	-2.8
3,330,122	+		Rru_A2886	0.42	-0.0
3,330,122	+		Rru_A2886	0.42	-1.7
3,330,123	-		Rru_A2886	0.42	-1.0
3,330,123	-		Rru_A2886	0.42	-2.1
3,330,123	-		Rru_A2886	0.42	-0.0
3,330,323	+		Rru_A2886	0.48	-3.6
3,330,323	+		Rru_A2886	0.48	-2.7
3,330,323	+		Rru_A2886	0.48	-0.0
3,330,325	+		Rru_A2886	0.49	-1.6
3,330,325	+		Rru_A2886	0.49	-2.7
3,330,325	+		Rru_A2886	0.49	-3.2
3,330,326	-		Rru_A2886	0.49	-2.5
3,330,371	+		Rru_A2886	0.50	-2.8
3,330,371	+		Rru_A2886	0.50	-2.6
3,330,371	+		Rru_A2886	0.50	-2.7
3,330,371	+		Rru_A2886	0.50	-2.4
3,330,371	+		Rru_A2886	0.50	-2.7
3,330,372	-		Rru_A2886	0.50	-2.5
3,330,372	-		Rru_A2886	0.50	-0.0
3,330,372	-		Rru_A2886	0.50	-0.0
3,330,372	-		Rru_A2886	0.50	-1.3
3,330,377	+		Rru_A2886	0.50	-3.5
3,330,377	+		Rru_A2886	0.50	-1.8
3,330,377	+		Rru_A2886	0.50	-2.5
3,330,377	+		Rru_A2886	0.50	-2.6
3,330,378	-		Rru_A2886	0.50	-1.0
3,330,378	-		Rru_A2886	0.50	-2.7
3,330,378	-		Rru_A2886	0.50	-0.0
3,330,521	+		Rru_A2886	0.55	-0.0
3,330,521	+		Rru_A2886	0.55	-2.7
3,330,522	-		Rru_A2886	0.55	-2.8
3,330,591	-		Rru_A2886	0.57	-0.0
3,330,595	+		Rru_A2886	0.57	-2.5
3,330,596	-		Rru_A2886	0.57	-3.2
3,330,612	-		Rru_A2886	0.57	-0.0
3,330,926	+		Rru_A2886	0.67	-3.2
3,330,926	+		Rru_A2886	0.67	-1.0
3,330,926	+		Rru_A2886	0.67	-0.0
3,330,926	+		Rru_A2886	0.67	-2.6
3,330,926	+		Rru_A2886	0.67	-2.6
3,330,926	+		Rru_A2886	0.67	-0.0
3,330,927	-		Rru_A2886	0.67	-3.0
3,330,927	-		Rru_A2886	0.67	-2.4
3,330,927	-		Rru_A2886	0.67	-2.0
3,330,927	-		Rru_A2886	0.67	-3.0
3,330,927	-		Rru_A2886	0.67	-2.8
3,330,927	-		Rru_A2886	0.67	-3.9
3,330,983	+		Rru_A2886	0.69	-1.0
3,330,983	+		Rru_A2886	0.69	-2.4
3,330,984	-		Rru_A2886	0.69	-4.1
3,330,984	-		Rru_A2886	0.69	-2.7
3,330,984	-		Rru_A2886	0.69	-2.3
3,330,984	-		Rru_A2886	0.69	-2.8
3,331,037	+		Rru_A2886	0.70	-2.4
3,331,037	+		Rru_A2886	0.70	-3.4
3,331,037	+		Rru_A2886	0.70	-3.2
3,331,038	-		Rru_A2886	0.70	-4.9
3,331,038	-		Rru_A2886	0.70	-3.4
3,331,038	-		Rru_A2886	0.70	-0.0
3,331,282	+		Rru_A2886	0.78	-2.0
3,331,283	-		Rru_A2886	0.78	-0.0
3,331,283	-		Rru_A2886	0.78	-2.6
3,331,283	-		Rru_A2886	0.78	-0.0
3,331,286	+		Rru_A2886	0.78	-2.5
3,331,286	+		Rru_A2886	0.78	-0.0
3,331,286	+		Rru_A2886	0.78	-3.3
3,331,286	+		Rru_A2886	0.78	-3.5
3,331,286	+		Rru_A2886	0.78	-2.3
3,331,286	+		Rru_A2886	0.78	-0.0
3,331,286	+		Rru_A2886	0.78	-2.4
3,331,286	+		Rru_A2886	0.78	-2.2
3,331,286	+		Rru_A2886	0.78	-4.6
3,331,286	+		Rru_A2886	0.78	-2.0
3,331,287	-		Rru_A2886	0.78	-1.3
3,331,287	-		Rru_A2886	0.78	-3.5
3,331,484	-		Rru_A2886	0.84	-2.6
3,331,798	+				-3.9
3,331,892	+				-2.3
3,331,893	-				-2.8
3,331,984	+				+1.3
3,332,223	+		Rru_A2887	0.30	-0.0
3,332,391	+		Rru_A2887	0.65	-0.0
3,332,391	+		Rru_A2887	0.65	+0.4
3,332,392	-		Rru_A2887	0.65	-0.0
3,332,526	+				-0.0
3,332,636	+				-0.0
3,332,697	+				+0.5
3,332,697	+				-0.0
3,332,699	+				-0.0
3,332,699	+				-0.0
3,332,699	+				+0.2
3,332,699	+				+0.3
3,332,699	+				-0.5
3,332,700	-				-0.1
3,332,712	+				+1.0
3,332,712	+				-0.0
3,332,713	-				-0.0
3,332,713	-				+0.6
3,332,794	-				-0.1
3,332,873	-		Rru_A2888	0.14	-0.0
3,332,909	-		Rru_A2888	0.19	-0.0
3,332,985	-		Rru_A2888	0.30	+0.3
3,332,985	-		Rru_A2888	0.30	-1.0