Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2883

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2882 and Rru_A2883 are separated by 225 nucleotidesRru_A2883 and Rru_A2884 are separated by 194 nucleotidesRru_A2884 and Rru_A2885 are separated by 320 nucleotides Rru_A2882: Rru_A2882 - Sigma 70 (RpoD) (NCBI), at 3,322,342 to 3,324,432 _A2882 Rru_A2883: Rru_A2883 - DNA primase (NCBI), at 3,324,658 to 3,326,520 _A2883 Rru_A2884: Rru_A2884 - GatB/Yqey (NCBI), at 3,326,715 to 3,327,173 _A2884 Rru_A2885: Rru_A2885 - Carbamoyl-phosphate synthase, small subunit (NCBI), at 3,327,494 to 3,328,663 _A2885 Position (kb) 3324 3325 3326 3327Strain fitness (log2 ratio) -2 -1 0 1at 3326.661 kb on - strandat 3326.717 kb on - strandat 3326.717 kb on - strandat 3326.717 kb on - strandat 3326.717 kb on - strandat 3327.196 kb on - strandat 3327.276 kb on + strandat 3327.323 kb on + strandat 3327.323 kb on + strandat 3327.324 kb on - strandat 3327.324 kb on - strandat 3327.327 kb on + strandat 3327.328 kb on - strandat 3327.472 kb on + strandat 3327.473 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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3,326,661 - -0.1
3,326,717 - -1.0
3,326,717 - -1.6
3,326,717 - -0.0
3,326,717 - -0.7
3,327,196 - -0.0
3,327,276 + +0.8
3,327,323 + -0.0
3,327,323 + +0.8
3,327,324 - -2.1
3,327,324 - -1.9
3,327,327 + +1.7
3,327,328 - -0.0
3,327,472 + +0.3
3,327,473 - -0.0

Or see this region's nucleotide sequence