Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2852

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
3,280,563	-				-0.0
3,281,065	+		Rru_A2851	0.63	+0.4
3,281,068	+		Rru_A2851	0.64	+0.9
3,281,069	-		Rru_A2851	0.64	+0.9
3,281,069	-		Rru_A2851	0.64	-0.0
3,281,069	-		Rru_A2851	0.64	-0.0
3,281,108	+		Rru_A2851	0.69	+0.5
3,281,141	+		Rru_A2851	0.73	+1.5
3,281,141	+		Rru_A2851	0.73	-0.0
3,281,141	+		Rru_A2851	0.73	-0.2
3,281,142	-		Rru_A2851	0.73	-0.0
3,281,142	-		Rru_A2851	0.73	+1.6
3,281,142	-		Rru_A2851	0.73	+1.3
3,281,142	-		Rru_A2851	0.73	+0.4
3,281,284	+				+0.3
3,281,284	+				+0.8
3,281,285	-				+0.7
3,281,347	-				+0.5
3,281,347	-				+0.6
3,281,360	-				-0.1
3,281,412	-				-0.0
3,281,412	-				-0.0
3,281,631	+				-0.2
3,281,631	+				+0.7
3,281,631	+				-0.1
3,281,631	+				-0.0
3,281,761	-		Rru_A2852	0.11	+0.7
3,281,761	-		Rru_A2852	0.11	-0.0
3,281,761	-		Rru_A2852	0.11	+1.3
3,281,770	-		Rru_A2852	0.11	-0.0
3,281,770	-		Rru_A2852	0.11	+0.7
3,281,788	-		Rru_A2852	0.12	-0.0
3,281,788	-		Rru_A2852	0.12	-1.6
3,281,788	-		Rru_A2852	0.12	+0.8
3,281,790	+		Rru_A2852	0.12	-0.0
3,281,791	-		Rru_A2852	0.12	-0.0
3,281,791	-		Rru_A2852	0.12	+1.2
3,281,847	-		Rru_A2852	0.15	+0.3
3,281,877	-		Rru_A2852	0.16	+0.9
3,282,199	-		Rru_A2852	0.31	+0.5
3,282,200	+		Rru_A2852	0.31	-0.3
3,282,200	+		Rru_A2852	0.31	-0.2
3,282,200	+		Rru_A2852	0.31	+0.3
3,282,201	-		Rru_A2852	0.31	-0.0
3,282,201	-		Rru_A2852	0.31	-1.6
3,282,201	-		Rru_A2852	0.31	+0.9
3,282,201	-		Rru_A2852	0.31	-0.0
3,282,495	+		Rru_A2852	0.44	+0.2
3,282,566	+		Rru_A2852	0.48	+0.6
3,282,566	+		Rru_A2852	0.48	-0.0
3,282,567	-		Rru_A2852	0.48	+0.2
3,282,647	+		Rru_A2852	0.51	-0.1
3,282,647	+		Rru_A2852	0.51	-0.0
3,282,647	+		Rru_A2852	0.51	-0.0
3,282,647	+		Rru_A2852	0.51	+1.3
3,282,647	+		Rru_A2852	0.51	-0.0
3,282,647	+		Rru_A2852	0.51	-0.4
3,282,647	+		Rru_A2852	0.51	+0.5
3,282,648	-		Rru_A2852	0.51	+0.1
3,282,840	+		Rru_A2852	0.60	-2.3
3,282,841	-		Rru_A2852	0.60	+0.3
3,283,002	+		Rru_A2852	0.68	-0.0
3,283,002	+		Rru_A2852	0.68	-0.0
3,283,002	+		Rru_A2852	0.68	+0.0
3,283,002	+		Rru_A2852	0.68	-0.0
3,283,002	+		Rru_A2852	0.68	-0.1
3,283,002	+		Rru_A2852	0.68	+0.2
3,283,002	+		Rru_A2852	0.68	-0.0
3,283,002	+		Rru_A2852	0.68	-0.0
3,283,002	+		Rru_A2852	0.68	-0.0
3,283,003	-		Rru_A2852	0.68	+0.1
3,283,003	-		Rru_A2852	0.68	-0.3
3,283,003	-		Rru_A2852	0.68	+0.4
3,283,003	-		Rru_A2852	0.68	-1.6
3,283,003	-		Rru_A2852	0.68	-1.0
3,283,007	+		Rru_A2852	0.68	+2.2
3,283,187	+		Rru_A2852	0.76	+2.0
3,283,187	+		Rru_A2852	0.76	-0.0
3,283,187	+		Rru_A2852	0.76	+0.7
3,283,187	+		Rru_A2852	0.76	-0.0
3,283,187	+		Rru_A2852	0.76	+0.4
3,283,297	+		Rru_A2852	0.81	-0.3
3,283,297	+		Rru_A2852	0.81	-0.3
3,283,297	+		Rru_A2852	0.81	-0.0
3,283,298	-		Rru_A2852	0.81	+0.6
3,283,356	+		Rru_A2852	0.84	+0.2
3,283,357	-		Rru_A2852	0.84	+0.0
3,283,357	-		Rru_A2852	0.84	+0.1
3,283,359	+		Rru_A2852	0.84	-0.5
3,283,359	+		Rru_A2852	0.84	-0.0
3,283,359	+		Rru_A2852	0.84	-0.2
3,283,359	+		Rru_A2852	0.84	-0.0
3,283,359	+		Rru_A2852	0.84	-0.0
3,283,359	+		Rru_A2852	0.84	-0.0
3,283,359	+		Rru_A2852	0.84	-0.0
3,283,359	+		Rru_A2852	0.84	+0.7
3,283,359	+		Rru_A2852	0.84	-0.0
3,283,359	+		Rru_A2852	0.84	-0.0
3,283,359	+		Rru_A2852	0.84	+0.3
3,283,360	-		Rru_A2852	0.84	+1.6
3,283,360	-		Rru_A2852	0.84	+0.1
3,283,360	-		Rru_A2852	0.84	-0.0
3,283,360	-		Rru_A2852	0.84	-0.0
3,283,360	-		Rru_A2852	0.84	+1.3
3,283,360	-		Rru_A2852	0.84	+0.2
3,283,360	-		Rru_A2852	0.84	-0.5
3,283,360	-		Rru_A2852	0.84	-0.4
3,283,360	-		Rru_A2852	0.84	-0.0
3,283,360	-		Rru_A2852	0.84	-0.1
3,283,360	-		Rru_A2852	0.84	+0.5
3,283,361	+		Rru_A2852	0.84	-0.0
3,283,361	+		Rru_A2852	0.84	-0.0
3,283,361	+		Rru_A2852	0.84	+0.4
3,283,361	+		Rru_A2852	0.84	+2.5
3,283,362	-		Rru_A2852	0.84	+0.8
3,283,474	-		Rru_A2852	0.89	-0.8
3,283,474	-		Rru_A2852	0.89	-0.0
3,283,536	+				-0.0
3,283,536	+				-1.0
3,283,537	-				-0.0
3,283,557	-				+0.2
3,283,596	-				-0.0
3,283,596	-				-0.0
3,283,638	+				+1.2
3,283,754	+				-0.6
3,283,853	+				+0.0
3,283,853	+				-0.0
3,283,889	-		Rru_A2853	0.11	-0.3
3,284,088	+		Rru_A2853	0.24	-0.6
3,284,089	-		Rru_A2853	0.24	-0.0
3,284,089	-		Rru_A2853	0.24	-0.0
3,284,126	+		Rru_A2853	0.26	+0.2
3,284,156	+		Rru_A2853	0.28	+1.1
3,284,157	-		Rru_A2853	0.28	-0.0
3,284,157	-		Rru_A2853	0.28	+0.8
3,284,157	-		Rru_A2853	0.28	+1.7
3,284,157	-		Rru_A2853	0.28	-0.0
3,284,204	+		Rru_A2853	0.31	+1.2
3,284,204	+		Rru_A2853	0.31	+0.5
3,284,205	-		Rru_A2853	0.31	+0.5
3,284,205	-		Rru_A2853	0.31	-0.0
3,284,205	-		Rru_A2853	0.31	-0.2
3,284,205	-		Rru_A2853	0.31	-0.0
3,284,206	+		Rru_A2853	0.31	+0.1
3,284,206	+		Rru_A2853	0.31	-0.0
3,284,206	+		Rru_A2853	0.31	-0.1
3,284,206	+		Rru_A2853	0.31	+2.6
3,284,207	-		Rru_A2853	0.31	-0.0
3,284,207	-		Rru_A2853	0.31	+0.6
3,284,207	-		Rru_A2853	0.31	+0.3
3,284,209	+		Rru_A2853	0.31	+0.0
3,284,255	+		Rru_A2853	0.34	+0.2
3,284,255	+		Rru_A2853	0.34	+0.5
3,284,540	+		Rru_A2853	0.53	-0.1
3,284,561	+		Rru_A2853	0.54	-0.0
3,284,561	+		Rru_A2853	0.54	+0.4
3,284,561	+		Rru_A2853	0.54	+1.9
3,284,562	-		Rru_A2853	0.54	+1.0
3,284,562	-		Rru_A2853	0.54	+0.8
3,284,562	-		Rru_A2853	0.54	+0.8
3,284,562	-		Rru_A2853	0.54	+0.6
3,284,562	-		Rru_A2853	0.54	-1.0
3,284,562	-		Rru_A2853	0.54	-0.0
3,284,563	+		Rru_A2853	0.54	+0.1
3,284,564	-		Rru_A2853	0.54	+0.7
3,284,564	-		Rru_A2853	0.54	+0.6
3,284,600	-		Rru_A2853	0.57	+1.2