Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2771 and Rru_A2772 overlap by 17 nucleotides Rru_A2772 and Rru_A2773 are separated by 275 nucleotides Rru_A2773 and Rru_A2774 are separated by 27 nucleotides
Rru_A2771: Rru_A2771 - Histidinol dehydrogenase (NCBI), at 3,204,714 to 3,206,018
_A2771
Rru_A2772: Rru_A2772 - ATP phosphoribosyltransferase (NCBI), at 3,206,002 to 3,206,685
_A2772
Rru_A2773: Rru_A2773 - hypothetical protein (NCBI), at 3,206,961 to 3,207,605
_A2773
Rru_A2774: Rru_A2774 - chemotaxis sensory transducer (NCBI), at 3,207,633 to 3,209,822
_A2774
Position (kb)
3206
3207
3208 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3206.307 kb on + strand, within Rru_A2772 at 3206.610 kb on + strand, within Rru_A2772 at 3206.610 kb on + strand, within Rru_A2772 at 3206.611 kb on - strand, within Rru_A2772 at 3206.611 kb on - strand, within Rru_A2772 at 3206.692 kb on + strand at 3206.693 kb on - strand at 3206.693 kb on - strand at 3206.789 kb on + strand at 3206.813 kb on + strand at 3206.814 kb on - strand at 3206.814 kb on - strand at 3206.818 kb on + strand at 3206.819 kb on - strand at 3206.819 kb on - strand at 3206.896 kb on - strand at 3206.896 kb on - strand at 3206.896 kb on - strand at 3207.173 kb on + strand, within Rru_A2773 at 3207.173 kb on + strand, within Rru_A2773 at 3207.173 kb on + strand, within Rru_A2773 at 3207.603 kb on + strand at 3207.603 kb on + strand at 3207.603 kb on + strand at 3207.603 kb on + strand at 3207.603 kb on + strand at 3207.604 kb on - strand at 3207.604 kb on - strand at 3207.604 kb on - strand at 3207.604 kb on - strand at 3207.604 kb on - strand at 3207.604 kb on - strand at 3207.604 kb on - strand at 3207.607 kb on + strand at 3207.607 kb on + strand at 3207.608 kb on - strand at 3207.608 kb on - strand at 3207.634 kb on + strand at 3207.634 kb on + strand at 3207.782 kb on + strand at 3207.782 kb on + strand at 3207.782 kb on + strand at 3208.373 kb on + strand, within Rru_A2774 at 3208.555 kb on - strand, within Rru_A2774
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 3,206,307 + Rru_A2772 0.45 -0.0 3,206,610 + Rru_A2772 0.89 -3.3 3,206,610 + Rru_A2772 0.89 -0.0 3,206,611 - Rru_A2772 0.89 -0.0 3,206,611 - Rru_A2772 0.89 -0.0 3,206,692 + -0.0 3,206,693 - -3.2 3,206,693 - -3.7 3,206,789 + -0.0 3,206,813 + -3.0 3,206,814 - -0.0 3,206,814 - +1.0 3,206,818 + -1.6 3,206,819 - -0.0 3,206,819 - -0.3 3,206,896 - +0.2 3,206,896 - -0.0 3,206,896 - +0.5 3,207,173 + Rru_A2773 0.33 +0.2 3,207,173 + Rru_A2773 0.33 -0.0 3,207,173 + Rru_A2773 0.33 -0.3 3,207,603 + -0.0 3,207,603 + -0.4 3,207,603 + +0.5 3,207,603 + +0.4 3,207,603 + -0.0 3,207,604 - -0.0 3,207,604 - -0.0 3,207,604 - -0.0 3,207,604 - +0.5 3,207,604 - -0.0 3,207,604 - -0.0 3,207,604 - -2.4 3,207,607 + +0.3 3,207,607 + -0.7 3,207,608 - -0.1 3,207,608 - +0.1 3,207,634 + +0.2 3,207,634 + -0.0 3,207,782 + -1.0 3,207,782 + -0.0 3,207,782 + +1.0 3,208,373 + Rru_A2774 0.34 +0.6 3,208,555 - Rru_A2774 0.42 -0.0
Or see this region's nucleotide sequence