Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2768 and Rru_A2769 are separated by 146 nucleotides Rru_A2769 and Rru_A2770 are separated by 5 nucleotides Rru_A2770 and Rru_A2771 are separated by 2 nucleotides
Rru_A2768: Rru_A2768 - Maf-like protein (NCBI), at 3,202,992 to 3,203,624
_A2768
Rru_A2769: Rru_A2769 - Protein tyrosine phosphatase (NCBI), at 3,203,771 to 3,204,220
_A2769
Rru_A2770: Rru_A2770 - Uncharacterized conserved protein UCP032146 (NCBI), at 3,204,226 to 3,204,711
_A2770
Rru_A2771: Rru_A2771 - Histidinol dehydrogenase (NCBI), at 3,204,714 to 3,206,018
_A2771
Position (kb)
3204
3205 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3203.676 kb on + strand at 3203.694 kb on + strand at 3203.712 kb on + strand at 3203.712 kb on + strand at 3203.712 kb on + strand at 3203.713 kb on - strand at 3204.277 kb on - strand, within Rru_A2770 at 3204.408 kb on - strand, within Rru_A2770 at 3204.428 kb on + strand, within Rru_A2770 at 3204.670 kb on - strand at 3204.670 kb on - strand at 3204.716 kb on - strand at 3204.953 kb on + strand, within Rru_A2771 at 3205.326 kb on - strand, within Rru_A2771 at 3205.326 kb on - strand, within Rru_A2771 at 3205.373 kb on - strand, within Rru_A2771 at 3205.373 kb on - strand, within Rru_A2771 at 3205.426 kb on + strand, within Rru_A2771 at 3205.427 kb on - strand, within Rru_A2771 at 3205.606 kb on + strand, within Rru_A2771 at 3205.631 kb on - strand, within Rru_A2771 at 3205.631 kb on - strand, within Rru_A2771 at 3205.631 kb on - strand, within Rru_A2771
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 3,203,676 + -0.0 3,203,694 + -0.0 3,203,712 + -0.0 3,203,712 + -0.0 3,203,712 + -0.0 3,203,713 - -0.0 3,204,277 - Rru_A2770 0.10 -0.0 3,204,408 - Rru_A2770 0.37 -3.0 3,204,428 + Rru_A2770 0.42 -0.0 3,204,670 - -1.4 3,204,670 - -0.6 3,204,716 - +0.8 3,204,953 + Rru_A2771 0.18 +1.4 3,205,326 - Rru_A2771 0.47 -0.0 3,205,326 - Rru_A2771 0.47 +0.4 3,205,373 - Rru_A2771 0.50 -3.4 3,205,373 - Rru_A2771 0.50 -0.0 3,205,426 + Rru_A2771 0.55 -0.0 3,205,427 - Rru_A2771 0.55 -0.0 3,205,606 + Rru_A2771 0.68 -4.0 3,205,631 - Rru_A2771 0.70 -0.0 3,205,631 - Rru_A2771 0.70 -0.0 3,205,631 - Rru_A2771 0.70 -0.0
Or see this region's nucleotide sequence