Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2716 and Rru_A2717 are separated by 169 nucleotides Rru_A2717 and Rru_A2718 are separated by 331 nucleotides
Rru_A2716: Rru_A2716 - Acyltransferase 3 (NCBI), at 3,139,485 to 3,140,588
_A2716
Rru_A2717: Rru_A2717 - Isochorismatase hydrolase (NCBI), at 3,140,758 to 3,141,327
_A2717
Rru_A2718: Rru_A2718 - DEAD/DEAH box helicase (NCBI), at 3,141,659 to 3,144,058
_A2718
Position (kb)
3140
3141
3142 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3139.804 kb on - strand, within Rru_A2716 at 3139.804 kb on - strand, within Rru_A2716 at 3139.831 kb on - strand, within Rru_A2716 at 3139.842 kb on - strand, within Rru_A2716 at 3139.842 kb on - strand, within Rru_A2716 at 3139.911 kb on + strand, within Rru_A2716 at 3140.007 kb on + strand, within Rru_A2716 at 3140.007 kb on + strand, within Rru_A2716 at 3140.007 kb on + strand, within Rru_A2716 at 3140.007 kb on + strand, within Rru_A2716 at 3140.008 kb on - strand, within Rru_A2716 at 3140.008 kb on - strand, within Rru_A2716 at 3140.040 kb on + strand, within Rru_A2716 at 3140.164 kb on - strand, within Rru_A2716 at 3140.164 kb on - strand, within Rru_A2716 at 3140.193 kb on + strand, within Rru_A2716 at 3140.193 kb on + strand, within Rru_A2716 at 3140.194 kb on - strand, within Rru_A2716 at 3140.194 kb on - strand, within Rru_A2716 at 3140.194 kb on - strand, within Rru_A2716 at 3140.194 kb on - strand, within Rru_A2716 at 3140.208 kb on + strand, within Rru_A2716 at 3140.209 kb on - strand, within Rru_A2716 at 3140.262 kb on + strand, within Rru_A2716 at 3140.262 kb on + strand, within Rru_A2716 at 3140.262 kb on + strand, within Rru_A2716 at 3140.262 kb on + strand, within Rru_A2716 at 3140.263 kb on - strand, within Rru_A2716 at 3140.283 kb on + strand, within Rru_A2716 at 3140.283 kb on + strand, within Rru_A2716 at 3140.284 kb on - strand, within Rru_A2716 at 3140.284 kb on - strand, within Rru_A2716 at 3140.284 kb on - strand, within Rru_A2716 at 3140.284 kb on - strand, within Rru_A2716 at 3140.347 kb on - strand, within Rru_A2716 at 3140.347 kb on - strand, within Rru_A2716 at 3140.353 kb on - strand, within Rru_A2716 at 3140.353 kb on - strand, within Rru_A2716 at 3140.423 kb on + strand, within Rru_A2716 at 3140.423 kb on + strand, within Rru_A2716 at 3140.490 kb on + strand at 3140.490 kb on + strand at 3140.491 kb on - strand at 3140.542 kb on - strand at 3140.542 kb on - strand at 3140.542 kb on - strand at 3140.544 kb on - strand at 3140.568 kb on + strand at 3140.568 kb on + strand at 3140.568 kb on + strand at 3140.569 kb on - strand at 3140.569 kb on - strand at 3140.666 kb on + strand at 3140.667 kb on - strand at 3140.667 kb on - strand at 3140.667 kb on - strand at 3140.668 kb on + strand at 3140.668 kb on + strand at 3140.668 kb on + strand at 3140.668 kb on + strand at 3140.668 kb on + strand at 3140.668 kb on + strand at 3140.669 kb on - strand at 3140.669 kb on - strand at 3140.669 kb on - strand at 3140.669 kb on - strand at 3140.669 kb on - strand at 3141.040 kb on + strand, within Rru_A2717 at 3141.040 kb on + strand, within Rru_A2717 at 3141.041 kb on - strand, within Rru_A2717 at 3141.115 kb on + strand, within Rru_A2717 at 3141.115 kb on + strand, within Rru_A2717 at 3141.115 kb on + strand, within Rru_A2717 at 3141.115 kb on + strand, within Rru_A2717 at 3141.115 kb on + strand, within Rru_A2717 at 3141.115 kb on + strand, within Rru_A2717 at 3141.115 kb on + strand, within Rru_A2717 at 3141.116 kb on - strand, within Rru_A2717 at 3141.116 kb on - strand, within Rru_A2717 at 3141.120 kb on + strand, within Rru_A2717 at 3141.120 kb on + strand, within Rru_A2717 at 3141.121 kb on - strand, within Rru_A2717 at 3141.411 kb on + strand at 3141.412 kb on - strand at 3141.412 kb on - strand at 3141.470 kb on + strand at 3141.480 kb on + strand at 3141.480 kb on + strand at 3141.480 kb on + strand at 3141.480 kb on + strand at 3141.482 kb on + strand at 3141.482 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 3,139,804 - Rru_A2716 0.29 +0.8 3,139,804 - Rru_A2716 0.29 +0.4 3,139,831 - Rru_A2716 0.31 +0.4 3,139,842 - Rru_A2716 0.32 +0.9 3,139,842 - Rru_A2716 0.32 -0.0 3,139,911 + Rru_A2716 0.39 -0.0 3,140,007 + Rru_A2716 0.47 -0.0 3,140,007 + Rru_A2716 0.47 +0.4 3,140,007 + Rru_A2716 0.47 -0.0 3,140,007 + Rru_A2716 0.47 -1.6 3,140,008 - Rru_A2716 0.47 +0.3 3,140,008 - Rru_A2716 0.47 -0.0 3,140,040 + Rru_A2716 0.50 -1.6 3,140,164 - Rru_A2716 0.62 +0.1 3,140,164 - Rru_A2716 0.62 -0.0 3,140,193 + Rru_A2716 0.64 -0.6 3,140,193 + Rru_A2716 0.64 -0.0 3,140,194 - Rru_A2716 0.64 +0.2 3,140,194 - Rru_A2716 0.64 -0.0 3,140,194 - Rru_A2716 0.64 -0.0 3,140,194 - Rru_A2716 0.64 +0.9 3,140,208 + Rru_A2716 0.65 +0.2 3,140,209 - Rru_A2716 0.66 -0.0 3,140,262 + Rru_A2716 0.70 -0.0 3,140,262 + Rru_A2716 0.70 -0.1 3,140,262 + Rru_A2716 0.70 +0.2 3,140,262 + Rru_A2716 0.70 -1.1 3,140,263 - Rru_A2716 0.70 -1.0 3,140,283 + Rru_A2716 0.72 -0.0 3,140,283 + Rru_A2716 0.72 -0.0 3,140,284 - Rru_A2716 0.72 -0.0 3,140,284 - Rru_A2716 0.72 -0.0 3,140,284 - Rru_A2716 0.72 +0.3 3,140,284 - Rru_A2716 0.72 +0.1 3,140,347 - Rru_A2716 0.78 -1.6 3,140,347 - Rru_A2716 0.78 -0.0 3,140,353 - Rru_A2716 0.79 -0.0 3,140,353 - Rru_A2716 0.79 -0.0 3,140,423 + Rru_A2716 0.85 +0.3 3,140,423 + Rru_A2716 0.85 +0.6 3,140,490 + -0.0 3,140,490 + -0.2 3,140,491 - -0.4 3,140,542 - -0.7 3,140,542 - -0.0 3,140,542 - +0.3 3,140,544 - -0.0 3,140,568 + -0.0 3,140,568 + +1.0 3,140,568 + -0.0 3,140,569 - -0.0 3,140,569 - +1.5 3,140,666 + +0.9 3,140,667 - -1.0 3,140,667 - -0.2 3,140,667 - +0.1 3,140,668 + -0.0 3,140,668 + +0.9 3,140,668 + -0.0 3,140,668 + +1.6 3,140,668 + +1.8 3,140,668 + -0.0 3,140,669 - -0.7 3,140,669 - -0.0 3,140,669 - +0.6 3,140,669 - -0.0 3,140,669 - -1.0 3,141,040 + Rru_A2717 0.49 +0.5 3,141,040 + Rru_A2717 0.49 +0.4 3,141,041 - Rru_A2717 0.50 -0.0 3,141,115 + Rru_A2717 0.63 -0.0 3,141,115 + Rru_A2717 0.63 -0.0 3,141,115 + Rru_A2717 0.63 -0.0 3,141,115 + Rru_A2717 0.63 -0.0 3,141,115 + Rru_A2717 0.63 -0.3 3,141,115 + Rru_A2717 0.63 -0.0 3,141,115 + Rru_A2717 0.63 +0.5 3,141,116 - Rru_A2717 0.63 -0.0 3,141,116 - Rru_A2717 0.63 -1.0 3,141,120 + Rru_A2717 0.64 +0.1 3,141,120 + Rru_A2717 0.64 +0.3 3,141,121 - Rru_A2717 0.64 -0.4 3,141,411 + -0.0 3,141,412 - -0.0 3,141,412 - -0.0 3,141,470 + -0.0 3,141,480 + -2.0 3,141,480 + +0.2 3,141,480 + +1.0 3,141,480 + +0.7 3,141,482 + +0.2 3,141,482 + -0.0
Or see this region's nucleotide sequence