Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2640

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
3,068,630	-				-1.4
3,068,630	-				-0.0
3,068,647	+				+0.5
3,068,648	-				+0.6
3,068,648	-				-0.3
3,068,715	-				+0.7
3,068,740	+				+0.4
3,068,741	-				+0.4
3,068,741	-				+1.2
3,068,771	-		Rru_A2639	0.13	-0.0
3,068,795	+		Rru_A2639	0.16	+0.7
3,068,795	+		Rru_A2639	0.16	-0.0
3,069,046	+		Rru_A2639	0.42	-0.0
3,069,046	+		Rru_A2639	0.42	-0.0
3,069,047	-		Rru_A2639	0.42	+0.8
3,069,047	-		Rru_A2639	0.42	-0.2
3,069,047	-		Rru_A2639	0.42	+1.1
3,069,079	+		Rru_A2639	0.45	-0.2
3,069,079	+		Rru_A2639	0.45	+0.3
3,069,080	-		Rru_A2639	0.45	-2.6
3,069,080	-		Rru_A2639	0.45	-0.0
3,069,158	+		Rru_A2639	0.54	-0.0
3,069,159	-		Rru_A2639	0.54	+0.3
3,069,159	-		Rru_A2639	0.54	-1.1
3,069,159	-		Rru_A2639	0.54	-1.0
3,069,170	-		Rru_A2639	0.55	-0.0
3,069,253	+		Rru_A2639	0.63	-0.0
3,069,353	+		Rru_A2639	0.74	+1.3
3,069,353	+		Rru_A2639	0.74	-0.0
3,069,353	+		Rru_A2639	0.74	+0.2
3,069,354	-		Rru_A2639	0.74	-0.0
3,069,354	-		Rru_A2639	0.74	-0.4
3,069,354	-		Rru_A2639	0.74	-0.0
3,069,354	-		Rru_A2639	0.74	-0.0
3,069,354	-		Rru_A2639	0.74	+0.9
3,069,354	-		Rru_A2639	0.74	+0.6
3,069,354	-		Rru_A2639	0.74	+0.1
3,069,450	-		Rru_A2639	0.84	-0.0
3,069,462	+		Rru_A2639	0.85	+0.6
3,069,462	+		Rru_A2639	0.85	-0.0
3,069,463	-		Rru_A2639	0.85	-0.0
3,069,463	-		Rru_A2639	0.85	-0.0
3,069,613	+				+0.4
3,069,614	-				+0.8
3,069,614	-				-0.0
3,069,745	+		Rru_A2640	0.13	-1.0
3,069,745	+		Rru_A2640	0.13	+0.8
3,069,745	+		Rru_A2640	0.13	-0.0
3,069,746	-		Rru_A2640	0.13	-0.0
3,069,746	-		Rru_A2640	0.13	-0.0
3,069,798	+		Rru_A2640	0.18	-0.0
3,069,798	+		Rru_A2640	0.18	+1.8
3,069,799	-		Rru_A2640	0.18	-0.0
3,069,804	+		Rru_A2640	0.18	+0.3
3,069,890	+		Rru_A2640	0.26	+0.2
3,069,991	-		Rru_A2640	0.35	-0.0
3,070,053	+		Rru_A2640	0.41	+0.4
3,070,321	+		Rru_A2640	0.65	-2.8
3,070,322	-		Rru_A2640	0.65	-0.0
3,070,322	-		Rru_A2640	0.65	+0.3
3,070,380	+		Rru_A2640	0.70	-0.0
3,070,381	-		Rru_A2640	0.70	+0.2
3,070,415	-		Rru_A2640	0.73	-0.5
3,070,415	-		Rru_A2640	0.73	+0.5
3,070,415	-		Rru_A2640	0.73	-1.0
3,070,415	-		Rru_A2640	0.73	-0.2
3,070,415	-		Rru_A2640	0.73	-1.6
3,070,503	+		Rru_A2640	0.81	-0.2
3,070,523	-		Rru_A2640	0.83	+0.7
3,070,524	+		Rru_A2640	0.83	+0.1
3,070,524	+		Rru_A2640	0.83	+0.4
3,070,524	+		Rru_A2640	0.83	-1.0
3,070,524	+		Rru_A2640	0.83	-0.0
3,070,524	+		Rru_A2640	0.83	-0.0
3,070,524	+		Rru_A2640	0.83	-0.1
3,070,525	-		Rru_A2640	0.83	-0.0
3,070,525	-		Rru_A2640	0.83	-0.0
3,070,525	-		Rru_A2640	0.83	-0.0
3,070,525	-		Rru_A2640	0.83	+0.3
3,070,525	-		Rru_A2640	0.83	+1.0
3,070,525	-		Rru_A2640	0.83	-0.1
3,070,528	+		Rru_A2640	0.83	-0.3
3,070,528	+		Rru_A2640	0.83	+1.7
3,070,529	-		Rru_A2640	0.84	-1.3
3,070,529	-		Rru_A2640	0.84	-0.3
3,070,529	-		Rru_A2640	0.84	-0.0
3,070,529	-		Rru_A2640	0.84	+0.4
3,070,529	-		Rru_A2640	0.84	-0.0
3,070,622	+				-0.0
3,070,623	-				-0.0
3,070,623	-				-0.0
3,070,623	-				-0.0
3,070,623	-				-1.0
3,070,706	+				+0.8
3,070,707	-				+1.6
3,070,758	+				+0.5
3,070,758	+				+1.9
3,070,853	+				+0.1
3,070,978	+		Rru_A2641	0.26	+0.3
3,070,979	-		Rru_A2641	0.26	-0.0
3,070,979	-		Rru_A2641	0.26	+1.1
3,070,992	+		Rru_A2641	0.28	+0.5
3,070,993	-		Rru_A2641	0.28	-0.0
3,070,995	-		Rru_A2641	0.29	-1.0
3,071,146	+		Rru_A2641	0.55	+0.5
3,071,176	-		Rru_A2641	0.61	+0.1
3,071,176	-		Rru_A2641	0.61	+1.0
3,071,178	-		Rru_A2641	0.61	+0.3
3,071,232	+		Rru_A2641	0.70	+0.6
3,071,350	-				-0.0
3,071,350	-				+0.6
3,071,350	-				-0.4
3,071,551	+				-0.1
3,071,551	+				-0.0
3,071,611	+				+1.0
3,071,612	-				-0.1
3,071,612	-				-0.4
3,071,612	-				-0.0
3,071,612	-				-0.0
3,071,622	+				+1.0
3,071,639	-				+1.0