Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2618 and Rru_A2619 are separated by 60 nucleotides Rru_A2619 and Rru_A2620 are separated by 5 nucleotides Rru_A2620 and Rru_A2621 are separated by 68 nucleotides
Rru_A2618: Rru_A2618 - Polyprenyl synthetase (NCBI), at 3,046,037 to 3,046,954
_A2618
Rru_A2619: Rru_A2619 - Deoxyxylulose-5-phosphate synthase (NCBI), at 3,047,015 to 3,048,952
_A2619
Rru_A2620: Rru_A2620 - Hemolysin A (NCBI), at 3,048,958 to 3,049,752
_A2620
Rru_A2621: Rru_A2621 - Peptidase S49 (NCBI), at 3,049,821 to 3,051,602
_A2621
Position (kb)
3047
3048
3049 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3046.169 kb on + strand, within Rru_A2618 at 3047.708 kb on + strand, within Rru_A2619 at 3047.708 kb on + strand, within Rru_A2619 at 3047.708 kb on + strand, within Rru_A2619 at 3047.763 kb on - strand, within Rru_A2619 at 3047.763 kb on - strand, within Rru_A2619 at 3047.766 kb on - strand, within Rru_A2619 at 3047.766 kb on - strand, within Rru_A2619 at 3047.984 kb on + strand, within Rru_A2619 at 3047.984 kb on + strand, within Rru_A2619 at 3047.984 kb on + strand, within Rru_A2619 at 3047.986 kb on + strand, within Rru_A2619 at 3047.986 kb on + strand, within Rru_A2619 at 3049.204 kb on - strand, within Rru_A2620 at 3049.215 kb on + strand, within Rru_A2620 at 3049.328 kb on - strand, within Rru_A2620 at 3049.328 kb on - strand, within Rru_A2620 at 3049.328 kb on - strand, within Rru_A2620 at 3049.816 kb on + strand at 3049.817 kb on - strand at 3049.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 3,046,169 + Rru_A2618 0.14 -0.0 3,047,708 + Rru_A2619 0.36 +0.6 3,047,708 + Rru_A2619 0.36 +1.4 3,047,708 + Rru_A2619 0.36 +2.4 3,047,763 - Rru_A2619 0.39 +3.6 3,047,763 - Rru_A2619 0.39 +3.4 3,047,766 - Rru_A2619 0.39 -0.0 3,047,766 - Rru_A2619 0.39 +4.1 3,047,984 + Rru_A2619 0.50 +1.2 3,047,984 + Rru_A2619 0.50 +0.4 3,047,984 + Rru_A2619 0.50 +1.6 3,047,986 + Rru_A2619 0.50 +1.0 3,047,986 + Rru_A2619 0.50 -0.4 3,049,204 - Rru_A2620 0.31 +2.6 3,049,215 + Rru_A2620 0.32 +3.0 3,049,328 - Rru_A2620 0.47 +1.8 3,049,328 - Rru_A2620 0.47 -0.0 3,049,328 - Rru_A2620 0.47 +2.5 3,049,816 + -0.3 3,049,817 - -0.0 3,049,817 - -0.0
Or see this region's nucleotide sequence