Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2616 and Rru_A2617 are separated by 52 nucleotides Rru_A2617 and Rru_A2618 are separated by 32 nucleotides Rru_A2618 and Rru_A2619 are separated by 60 nucleotides
Rru_A2616: Rru_A2616 - Histone deacetylase superfamily (NCBI), at 3,044,654 to 3,045,583
_A2616
Rru_A2617: Rru_A2617 - Exonuclease VII, small subunit (NCBI), at 3,045,636 to 3,046,004
_A2617
Rru_A2618: Rru_A2618 - Polyprenyl synthetase (NCBI), at 3,046,037 to 3,046,954
_A2618
Rru_A2619: Rru_A2619 - Deoxyxylulose-5-phosphate synthase (NCBI), at 3,047,015 to 3,048,952
_A2619
Position (kb)
3046
3047 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3045.086 kb on + strand, within Rru_A2616 at 3045.087 kb on - strand, within Rru_A2616 at 3045.087 kb on - strand, within Rru_A2616 at 3045.087 kb on - strand, within Rru_A2616 at 3045.087 kb on - strand, within Rru_A2616 at 3045.087 kb on - strand, within Rru_A2616 at 3045.087 kb on - strand, within Rru_A2616 at 3045.166 kb on + strand, within Rru_A2616 at 3045.166 kb on + strand, within Rru_A2616 at 3045.166 kb on + strand, within Rru_A2616 at 3045.166 kb on + strand, within Rru_A2616 at 3045.166 kb on + strand, within Rru_A2616 at 3045.166 kb on + strand, within Rru_A2616 at 3045.167 kb on - strand, within Rru_A2616 at 3045.167 kb on - strand, within Rru_A2616 at 3045.167 kb on - strand, within Rru_A2616 at 3045.167 kb on - strand, within Rru_A2616 at 3045.167 kb on - strand, within Rru_A2616 at 3045.167 kb on - strand, within Rru_A2616 at 3045.167 kb on - strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.194 kb on + strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.195 kb on - strand, within Rru_A2616 at 3045.672 kb on + strand at 3045.880 kb on - strand, within Rru_A2617 at 3046.169 kb on + strand, within Rru_A2618 at 3047.708 kb on + strand, within Rru_A2619 at 3047.708 kb on + strand, within Rru_A2619 at 3047.708 kb on + strand, within Rru_A2619 at 3047.763 kb on - strand, within Rru_A2619 at 3047.763 kb on - strand, within Rru_A2619 at 3047.766 kb on - strand, within Rru_A2619 at 3047.766 kb on - strand, within Rru_A2619
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 3,045,086 + Rru_A2616 0.46 -0.0 3,045,087 - Rru_A2616 0.47 -0.7 3,045,087 - Rru_A2616 0.47 -0.2 3,045,087 - Rru_A2616 0.47 -0.0 3,045,087 - Rru_A2616 0.47 -0.0 3,045,087 - Rru_A2616 0.47 -1.0 3,045,087 - Rru_A2616 0.47 -0.0 3,045,166 + Rru_A2616 0.55 -0.0 3,045,166 + Rru_A2616 0.55 -0.0 3,045,166 + Rru_A2616 0.55 +0.0 3,045,166 + Rru_A2616 0.55 +0.3 3,045,166 + Rru_A2616 0.55 -0.0 3,045,166 + Rru_A2616 0.55 -0.0 3,045,167 - Rru_A2616 0.55 -0.0 3,045,167 - Rru_A2616 0.55 +0.8 3,045,167 - Rru_A2616 0.55 -0.0 3,045,167 - Rru_A2616 0.55 -0.0 3,045,167 - Rru_A2616 0.55 -2.5 3,045,167 - Rru_A2616 0.55 -0.3 3,045,167 - Rru_A2616 0.55 -0.2 3,045,194 + Rru_A2616 0.58 +0.2 3,045,194 + Rru_A2616 0.58 +0.0 3,045,194 + Rru_A2616 0.58 +0.5 3,045,194 + Rru_A2616 0.58 -1.0 3,045,194 + Rru_A2616 0.58 -0.0 3,045,194 + Rru_A2616 0.58 -0.0 3,045,194 + Rru_A2616 0.58 +0.7 3,045,194 + Rru_A2616 0.58 -0.3 3,045,194 + Rru_A2616 0.58 -0.2 3,045,194 + Rru_A2616 0.58 -0.1 3,045,194 + Rru_A2616 0.58 +0.1 3,045,194 + Rru_A2616 0.58 -0.0 3,045,194 + Rru_A2616 0.58 -0.1 3,045,195 - Rru_A2616 0.58 -0.7 3,045,195 - Rru_A2616 0.58 -0.0 3,045,195 - Rru_A2616 0.58 -0.0 3,045,195 - Rru_A2616 0.58 -1.2 3,045,195 - Rru_A2616 0.58 -0.5 3,045,195 - Rru_A2616 0.58 -1.8 3,045,195 - Rru_A2616 0.58 -0.1 3,045,195 - Rru_A2616 0.58 -0.0 3,045,195 - Rru_A2616 0.58 -0.0 3,045,195 - Rru_A2616 0.58 -1.8 3,045,672 + +0.6 3,045,880 - Rru_A2617 0.66 -1.0 3,046,169 + Rru_A2618 0.14 -0.0 3,047,708 + Rru_A2619 0.36 +0.6 3,047,708 + Rru_A2619 0.36 +1.4 3,047,708 + Rru_A2619 0.36 +2.4 3,047,763 - Rru_A2619 0.39 +3.6 3,047,763 - Rru_A2619 0.39 +3.4 3,047,766 - Rru_A2619 0.39 -0.0 3,047,766 - Rru_A2619 0.39 +4.1
Or see this region's nucleotide sequence