Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2602 and Rru_A2603 are separated by 267 nucleotides Rru_A2603 and Rru_A2604 are separated by 21 nucleotides
Rru_A2602: Rru_A2602 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) (NCBI), at 3,024,243 to 3,026,708
_A2602
Rru_A2603: Rru_A2603 - Two Component Transcriptional Regulator, LuxR family (NCBI), at 3,026,976 to 3,027,656
_A2603
Rru_A2604: Rru_A2604 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) (NCBI), at 3,027,678 to 3,029,714
_A2604
Position (kb)
3026
3027
3028 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3026.761 kb on - strand at 3026.822 kb on + strand at 3026.863 kb on + strand at 3026.863 kb on + strand at 3027.078 kb on + strand, within Rru_A2603 at 3027.246 kb on - strand, within Rru_A2603 at 3027.246 kb on - strand, within Rru_A2603 at 3027.348 kb on + strand, within Rru_A2603 at 3027.348 kb on + strand, within Rru_A2603 at 3027.348 kb on + strand, within Rru_A2603 at 3027.348 kb on + strand, within Rru_A2603 at 3027.348 kb on + strand, within Rru_A2603 at 3027.349 kb on - strand, within Rru_A2603 at 3027.349 kb on - strand, within Rru_A2603 at 3027.349 kb on - strand, within Rru_A2603 at 3027.349 kb on - strand, within Rru_A2603 at 3027.551 kb on + strand, within Rru_A2603 at 3027.551 kb on + strand, within Rru_A2603 at 3027.551 kb on + strand, within Rru_A2603 at 3027.938 kb on + strand, within Rru_A2604 at 3027.938 kb on + strand, within Rru_A2604 at 3027.961 kb on + strand, within Rru_A2604 at 3027.962 kb on - strand, within Rru_A2604 at 3027.977 kb on - strand, within Rru_A2604 at 3028.127 kb on + strand, within Rru_A2604 at 3028.128 kb on - strand, within Rru_A2604 at 3028.267 kb on + strand, within Rru_A2604 at 3028.267 kb on + strand, within Rru_A2604 at 3028.268 kb on - strand, within Rru_A2604 at 3028.268 kb on - strand, within Rru_A2604 at 3028.268 kb on - strand, within Rru_A2604 at 3028.268 kb on - strand, within Rru_A2604 at 3028.268 kb on - strand, within Rru_A2604 at 3028.268 kb on - strand, within Rru_A2604 at 3028.268 kb on - strand, within Rru_A2604 at 3028.268 kb on - strand, within Rru_A2604 at 3028.364 kb on + strand, within Rru_A2604 at 3028.396 kb on + strand, within Rru_A2604 at 3028.528 kb on + strand, within Rru_A2604 at 3028.528 kb on + strand, within Rru_A2604 at 3028.528 kb on + strand, within Rru_A2604 at 3028.528 kb on + strand, within Rru_A2604 at 3028.528 kb on + strand, within Rru_A2604 at 3028.529 kb on - strand, within Rru_A2604 at 3028.529 kb on - strand, within Rru_A2604 at 3028.529 kb on - strand, within Rru_A2604 at 3028.539 kb on - strand, within Rru_A2604
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 3,026,761 - -0.0 3,026,822 + +2.4 3,026,863 + +1.2 3,026,863 + +2.0 3,027,078 + Rru_A2603 0.15 -0.8 3,027,246 - Rru_A2603 0.40 -0.1 3,027,246 - Rru_A2603 0.40 +0.4 3,027,348 + Rru_A2603 0.55 -0.0 3,027,348 + Rru_A2603 0.55 -0.7 3,027,348 + Rru_A2603 0.55 -0.0 3,027,348 + Rru_A2603 0.55 +0.8 3,027,348 + Rru_A2603 0.55 -0.3 3,027,349 - Rru_A2603 0.55 -0.2 3,027,349 - Rru_A2603 0.55 -1.2 3,027,349 - Rru_A2603 0.55 -0.0 3,027,349 - Rru_A2603 0.55 +0.4 3,027,551 + Rru_A2603 0.84 -1.2 3,027,551 + Rru_A2603 0.84 -0.0 3,027,551 + Rru_A2603 0.84 -0.5 3,027,938 + Rru_A2604 0.13 +2.2 3,027,938 + Rru_A2604 0.13 -0.2 3,027,961 + Rru_A2604 0.14 -0.0 3,027,962 - Rru_A2604 0.14 -0.0 3,027,977 - Rru_A2604 0.15 +1.2 3,028,127 + Rru_A2604 0.22 -0.3 3,028,128 - Rru_A2604 0.22 -0.3 3,028,267 + Rru_A2604 0.29 -1.6 3,028,267 + Rru_A2604 0.29 +1.0 3,028,268 - Rru_A2604 0.29 +0.5 3,028,268 - Rru_A2604 0.29 -0.7 3,028,268 - Rru_A2604 0.29 +1.0 3,028,268 - Rru_A2604 0.29 -0.0 3,028,268 - Rru_A2604 0.29 -0.1 3,028,268 - Rru_A2604 0.29 +0.6 3,028,268 - Rru_A2604 0.29 +0.6 3,028,268 - Rru_A2604 0.29 -0.0 3,028,364 + Rru_A2604 0.34 +1.2 3,028,396 + Rru_A2604 0.35 -0.3 3,028,528 + Rru_A2604 0.42 -0.0 3,028,528 + Rru_A2604 0.42 +0.5 3,028,528 + Rru_A2604 0.42 -1.0 3,028,528 + Rru_A2604 0.42 +1.7 3,028,528 + Rru_A2604 0.42 +0.3 3,028,529 - Rru_A2604 0.42 -2.2 3,028,529 - Rru_A2604 0.42 +1.1 3,028,529 - Rru_A2604 0.42 -0.0 3,028,539 - Rru_A2604 0.42 -0.0
Or see this region's nucleotide sequence