Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2542

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
2,954,558	+				+0.4
2,954,558	+				-0.0
2,954,559	-				+0.9
2,954,562	+				+0.5
2,954,562	+				-0.0
2,954,563	-				-0.0
2,954,580	+				+0.9
2,954,967	+		Rru_A2541	0.69	+1.9
2,954,967	+		Rru_A2541	0.69	+2.8
2,954,967	+		Rru_A2541	0.69	+2.3
2,954,967	+		Rru_A2541	0.69	+2.1
2,954,967	+		Rru_A2541	0.69	-0.0
2,954,967	+		Rru_A2541	0.69	+0.7
2,954,968	-		Rru_A2541	0.69	+0.0
2,954,968	-		Rru_A2541	0.69	-0.0
2,954,968	-		Rru_A2541	0.69	-0.0
2,955,150	+				+2.6
2,955,151	-				-0.2
2,955,151	-				+0.7
2,955,151	-				-0.0
2,955,151	-				+0.1
2,955,151	-				-0.3
2,955,151	-				-0.0
2,955,190	-				-0.0
2,955,190	-				+0.5
2,955,190	-				-0.2
2,955,190	-				-0.0
2,955,208	-				-0.0
2,955,215	+				+2.1
2,955,216	-				+0.2
2,955,575	-				-0.0
2,955,648	+				+0.5
2,955,841	+		Rru_A2542	0.17	+0.2
2,955,841	+		Rru_A2542	0.17	-0.0
2,955,842	-		Rru_A2542	0.17	-0.1
2,955,881	+		Rru_A2542	0.19	-1.0
2,955,881	+		Rru_A2542	0.19	-1.6
2,956,109	+		Rru_A2542	0.33	+0.1
2,956,109	+		Rru_A2542	0.33	-0.2
2,956,109	+		Rru_A2542	0.33	+0.4
2,956,109	+		Rru_A2542	0.33	-0.7
2,956,109	+		Rru_A2542	0.33	-0.0
2,956,110	-		Rru_A2542	0.33	+0.9
2,956,110	-		Rru_A2542	0.33	+0.2
2,956,110	-		Rru_A2542	0.33	+0.3
2,956,110	-		Rru_A2542	0.33	-0.0
2,956,110	-		Rru_A2542	0.33	+0.3
2,956,110	-		Rru_A2542	0.33	-0.0
2,956,187	+		Rru_A2542	0.38	+0.8
2,956,218	-		Rru_A2542	0.39	+0.1
2,956,218	-		Rru_A2542	0.39	-0.3
2,956,275	+		Rru_A2542	0.43	+0.6
2,956,275	+		Rru_A2542	0.43	-0.0
2,956,276	-		Rru_A2542	0.43	+0.8
2,956,282	+		Rru_A2542	0.43	+1.6
2,956,282	+		Rru_A2542	0.43	+1.8
2,956,283	-		Rru_A2542	0.43	-0.0
2,956,283	-		Rru_A2542	0.43	+0.8
2,956,283	-		Rru_A2542	0.43	+0.6
2,956,283	-		Rru_A2542	0.43	-0.0
2,956,289	+		Rru_A2542	0.44	+1.8
2,956,289	+		Rru_A2542	0.44	+1.6
2,956,289	+		Rru_A2542	0.44	+1.4
2,956,290	-		Rru_A2542	0.44	+0.2
2,956,290	-		Rru_A2542	0.44	-0.0
2,956,290	-		Rru_A2542	0.44	-0.0
2,956,290	-		Rru_A2542	0.44	+1.0
2,956,458	-		Rru_A2542	0.54	+0.6
2,956,458	-		Rru_A2542	0.54	+0.9
2,956,553	+		Rru_A2542	0.59	-0.0
2,956,554	-		Rru_A2542	0.59	+1.1
2,956,554	-		Rru_A2542	0.59	+0.2
2,956,554	-		Rru_A2542	0.59	-0.0
2,956,577	+		Rru_A2542	0.61	+2.4
2,956,578	-		Rru_A2542	0.61	+0.7
2,956,578	-		Rru_A2542	0.61	-1.6
2,956,578	-		Rru_A2542	0.61	+0.1
2,956,578	-		Rru_A2542	0.61	-0.0
2,956,578	-		Rru_A2542	0.61	+1.0
2,956,783	+		Rru_A2542	0.73	+2.8
2,956,783	+		Rru_A2542	0.73	+2.6
2,956,784	-		Rru_A2542	0.73	-0.0
2,956,786	-		Rru_A2542	0.73	-0.1
2,956,875	-		Rru_A2542	0.78	-2.3
2,956,943	-		Rru_A2542	0.83	-0.3
2,956,962	-		Rru_A2542	0.84	-0.0
2,956,962	-		Rru_A2542	0.84	+0.4
2,956,962	-		Rru_A2542	0.84	+0.1
2,956,963	+		Rru_A2542	0.84	-0.6
2,957,178	-				+0.1
2,957,178	-				+1.1
2,957,234	+				+3.3
2,957,329	+				-0.0
2,957,330	-				+0.9
2,957,351	+		Rru_A2543	0.13	+1.1
2,957,351	+		Rru_A2543	0.13	-0.0
2,957,351	+		Rru_A2543	0.13	-0.2
2,957,351	+		Rru_A2543	0.13	-0.0
2,957,352	-		Rru_A2543	0.14	-0.1
2,957,432	+		Rru_A2543	0.41	-0.0
2,957,433	-		Rru_A2543	0.42	-0.0
2,957,433	-		Rru_A2543	0.42	-0.0
2,957,485	+		Rru_A2543	0.59	-2.3
2,957,485	+		Rru_A2543	0.59	+1.2
2,957,486	-		Rru_A2543	0.60	-0.0
2,957,486	-		Rru_A2543	0.60	+0.0
2,957,561	-		Rru_A2543	0.86	-0.6
2,957,561	-		Rru_A2543	0.86	+1.2
2,957,567	-		Rru_A2543	0.88	-0.0
2,957,600	+				+0.2
2,957,770	+		Rru_A2544	0.10	+0.5
2,957,770	+		Rru_A2544	0.10	+0.8
2,957,837	-		Rru_A2544	0.15	+0.3
2,957,837	-		Rru_A2544	0.15	-1.0
2,957,837	-		Rru_A2544	0.15	-0.7
2,957,837	-		Rru_A2544	0.15	+0.6
2,957,844	+		Rru_A2544	0.15	+0.2
2,957,845	-		Rru_A2544	0.16	-0.0
2,958,081	+		Rru_A2544	0.32	-0.1
2,958,229	+		Rru_A2544	0.42	-0.1
2,958,229	+		Rru_A2544	0.42	-0.0
2,958,229	+		Rru_A2544	0.42	-0.0
2,958,229	+		Rru_A2544	0.42	-0.0
2,958,229	+		Rru_A2544	0.42	-0.0
2,958,229	+		Rru_A2544	0.42	-0.0
2,958,229	+		Rru_A2544	0.42	-0.0
2,958,229	+		Rru_A2544	0.42	+0.3
2,958,229	+		Rru_A2544	0.42	-0.0
2,958,230	-		Rru_A2544	0.42	+0.7
2,958,230	-		Rru_A2544	0.42	-0.0
2,958,230	-		Rru_A2544	0.42	+0.4
2,958,230	-		Rru_A2544	0.42	-1.0
2,958,230	-		Rru_A2544	0.42	+1.3
2,958,230	-		Rru_A2544	0.42	+1.3