Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2508 and Rru_A2509 are separated by 194 nucleotides Rru_A2509 and Rru_A2510 are separated by 95 nucleotides Rru_A2510 and Rru_A2511 are separated by 169 nucleotides
Rru_A2508: Rru_A2508 - 5-aminolevulinic acid synthase (NCBI), at 2,915,085 to 2,916,299
_A2508
Rru_A2509: Rru_A2509 - Fructose-bisphosphate aldolase (NCBI), at 2,916,494 to 2,917,426
_A2509
Rru_A2510: Rru_A2510 - hypothetical protein (NCBI), at 2,917,522 to 2,918,076
_A2510
Rru_A2511: Rru_A2511 - Putative diguanylate cyclase (GGDEF domain) (NCBI), at 2,918,246 to 2,920,306
_A2511
Position (kb)
2916
2917
2918 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2916.315 kb on + strand at 2916.315 kb on + strand at 2916.315 kb on + strand at 2916.315 kb on + strand at 2916.316 kb on - strand at 2916.316 kb on - strand at 2916.316 kb on - strand at 2916.316 kb on - strand at 2916.316 kb on - strand at 2916.506 kb on - strand at 2916.506 kb on - strand at 2916.536 kb on + strand at 2916.536 kb on + strand at 2916.537 kb on - strand at 2916.686 kb on + strand, within Rru_A2509 at 2916.686 kb on + strand, within Rru_A2509 at 2916.686 kb on + strand, within Rru_A2509 at 2916.687 kb on - strand, within Rru_A2509 at 2916.687 kb on - strand, within Rru_A2509 at 2916.687 kb on - strand, within Rru_A2509 at 2916.687 kb on - strand, within Rru_A2509 at 2916.687 kb on - strand, within Rru_A2509 at 2916.687 kb on - strand, within Rru_A2509 at 2916.687 kb on - strand, within Rru_A2509 at 2916.698 kb on + strand, within Rru_A2509 at 2916.698 kb on + strand, within Rru_A2509 at 2916.699 kb on - strand, within Rru_A2509 at 2916.821 kb on - strand, within Rru_A2509 at 2916.911 kb on + strand, within Rru_A2509 at 2916.941 kb on + strand, within Rru_A2509 at 2916.942 kb on - strand, within Rru_A2509 at 2917.063 kb on + strand, within Rru_A2509 at 2917.063 kb on + strand, within Rru_A2509 at 2917.064 kb on - strand, within Rru_A2509 at 2917.073 kb on + strand, within Rru_A2509 at 2917.084 kb on + strand, within Rru_A2509 at 2917.455 kb on + strand at 2917.461 kb on + strand at 2917.462 kb on - strand at 2917.497 kb on + strand at 2917.497 kb on + strand at 2917.497 kb on + strand at 2917.533 kb on + strand at 2917.549 kb on - strand at 2917.604 kb on - strand, within Rru_A2510 at 2917.606 kb on - strand, within Rru_A2510 at 2917.606 kb on - strand, within Rru_A2510 at 2918.053 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 2,916,315 + -0.0 2,916,315 + -0.0 2,916,315 + -0.0 2,916,315 + -0.0 2,916,316 - -0.0 2,916,316 - -4.1 2,916,316 - -0.0 2,916,316 - -1.8 2,916,316 - -3.1 2,916,506 - +0.6 2,916,506 - +1.1 2,916,536 + -0.1 2,916,536 + +0.3 2,916,537 - -0.2 2,916,686 + Rru_A2509 0.21 -0.0 2,916,686 + Rru_A2509 0.21 +0.3 2,916,686 + Rru_A2509 0.21 +0.5 2,916,687 - Rru_A2509 0.21 +1.6 2,916,687 - Rru_A2509 0.21 -0.0 2,916,687 - Rru_A2509 0.21 +0.9 2,916,687 - Rru_A2509 0.21 +0.2 2,916,687 - Rru_A2509 0.21 +1.1 2,916,687 - Rru_A2509 0.21 +0.7 2,916,687 - Rru_A2509 0.21 +1.7 2,916,698 + Rru_A2509 0.22 +0.4 2,916,698 + Rru_A2509 0.22 -0.0 2,916,699 - Rru_A2509 0.22 +1.2 2,916,821 - Rru_A2509 0.35 +0.8 2,916,911 + Rru_A2509 0.45 -0.6 2,916,941 + Rru_A2509 0.48 -0.0 2,916,942 - Rru_A2509 0.48 -0.0 2,917,063 + Rru_A2509 0.61 -0.0 2,917,063 + Rru_A2509 0.61 -0.0 2,917,064 - Rru_A2509 0.61 -0.0 2,917,073 + Rru_A2509 0.62 -0.0 2,917,084 + Rru_A2509 0.63 +0.1 2,917,455 + -0.0 2,917,461 + -0.0 2,917,462 - -0.0 2,917,497 + -0.0 2,917,497 + +0.4 2,917,497 + -0.0 2,917,533 + -0.7 2,917,549 - +0.5 2,917,604 - Rru_A2510 0.15 -0.0 2,917,606 - Rru_A2510 0.15 -1.6 2,917,606 - Rru_A2510 0.15 -0.0 2,918,053 - -0.0
Or see this region's nucleotide sequence