Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2463 and Rru_A2464 are separated by 136 nucleotides Rru_A2464 and Rru_A2465 are separated by 120 nucleotides
Rru_A2463: Rru_A2463 - N-formylglutamate amidohydrolase (NCBI), at 2,862,473 to 2,863,288
_A2463
Rru_A2464: Rru_A2464 - Hydroxypyruvate reductase (NCBI), at 2,863,425 to 2,864,690
_A2464
Rru_A2465: Rru_A2465 - Pyruvate kinase (NCBI), at 2,864,811 to 2,866,247
_A2465
Position (kb)
2863
2864
2865 Strain fitness (log2 ratio)
-1
0
1 at 2862.492 kb on + strand at 2862.493 kb on - strand at 2862.513 kb on - strand at 2862.631 kb on + strand, within Rru_A2463 at 2862.632 kb on - strand, within Rru_A2463 at 2862.663 kb on + strand, within Rru_A2463 at 2862.750 kb on + strand, within Rru_A2463 at 2862.750 kb on + strand, within Rru_A2463 at 2862.750 kb on + strand, within Rru_A2463 at 2862.751 kb on - strand, within Rru_A2463 at 2862.751 kb on - strand, within Rru_A2463 at 2862.751 kb on - strand, within Rru_A2463 at 2862.805 kb on + strand, within Rru_A2463 at 2862.805 kb on + strand, within Rru_A2463 at 2862.806 kb on - strand, within Rru_A2463 at 2862.806 kb on - strand, within Rru_A2463 at 2862.806 kb on - strand, within Rru_A2463 at 2862.806 kb on - strand, within Rru_A2463 at 2862.879 kb on + strand, within Rru_A2463 at 2862.880 kb on - strand, within Rru_A2463 at 2863.023 kb on + strand, within Rru_A2463 at 2863.023 kb on + strand, within Rru_A2463 at 2863.187 kb on + strand, within Rru_A2463 at 2863.187 kb on + strand, within Rru_A2463 at 2863.188 kb on - strand, within Rru_A2463 at 2863.334 kb on + strand at 2864.068 kb on - strand, within Rru_A2464 at 2864.375 kb on + strand, within Rru_A2464 at 2864.456 kb on + strand, within Rru_A2464 at 2864.456 kb on + strand, within Rru_A2464 at 2864.457 kb on - strand, within Rru_A2464
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 2,862,492 + -0.2 2,862,493 - +0.8 2,862,513 - -0.0 2,862,631 + Rru_A2463 0.19 +1.7 2,862,632 - Rru_A2463 0.19 +0.6 2,862,663 + Rru_A2463 0.23 +0.5 2,862,750 + Rru_A2463 0.34 -0.4 2,862,750 + Rru_A2463 0.34 -0.0 2,862,750 + Rru_A2463 0.34 -1.0 2,862,751 - Rru_A2463 0.34 -0.0 2,862,751 - Rru_A2463 0.34 +0.7 2,862,751 - Rru_A2463 0.34 -0.0 2,862,805 + Rru_A2463 0.41 -0.0 2,862,805 + Rru_A2463 0.41 -0.0 2,862,806 - Rru_A2463 0.41 -0.0 2,862,806 - Rru_A2463 0.41 -0.0 2,862,806 - Rru_A2463 0.41 +0.2 2,862,806 - Rru_A2463 0.41 -0.3 2,862,879 + Rru_A2463 0.50 -0.0 2,862,880 - Rru_A2463 0.50 -1.0 2,863,023 + Rru_A2463 0.67 -0.0 2,863,023 + Rru_A2463 0.67 -0.5 2,863,187 + Rru_A2463 0.88 +0.6 2,863,187 + Rru_A2463 0.88 -0.2 2,863,188 - Rru_A2463 0.88 +1.3 2,863,334 + +0.0 2,864,068 - Rru_A2464 0.51 -0.0 2,864,375 + Rru_A2464 0.75 +1.0 2,864,456 + Rru_A2464 0.81 +0.2 2,864,456 + Rru_A2464 0.81 +0.8 2,864,457 - Rru_A2464 0.82 +0.8
Or see this region's nucleotide sequence