Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2357 and Rru_A2358 are separated by 5 nucleotides Rru_A2358 and Rru_A2359 are separated by 10 nucleotides
Rru_A2357: Rru_A2357 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,744,061 to 2,745,071
_A2357
Rru_A2358: Rru_A2358 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,745,077 to 2,746,054
_A2358
Rru_A2359: Rru_A2359 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like (NCBI), at 2,746,065 to 2,747,093
_A2359
Position (kb)
2745
2746
2747 Strain fitness (log2 ratio)
-1
0
1
2 at 2744.256 kb on + strand, within Rru_A2357 at 2744.256 kb on + strand, within Rru_A2357 at 2744.256 kb on + strand, within Rru_A2357 at 2744.257 kb on - strand, within Rru_A2357 at 2744.257 kb on - strand, within Rru_A2357 at 2744.257 kb on - strand, within Rru_A2357 at 2744.257 kb on - strand, within Rru_A2357 at 2744.257 kb on - strand, within Rru_A2357 at 2744.265 kb on + strand, within Rru_A2357 at 2744.297 kb on + strand, within Rru_A2357 at 2744.298 kb on - strand, within Rru_A2357 at 2744.298 kb on - strand, within Rru_A2357 at 2744.298 kb on - strand, within Rru_A2357 at 2744.298 kb on - strand, within Rru_A2357 at 2744.481 kb on + strand, within Rru_A2357 at 2744.481 kb on + strand, within Rru_A2357 at 2744.482 kb on - strand, within Rru_A2357 at 2744.482 kb on - strand, within Rru_A2357 at 2744.516 kb on + strand, within Rru_A2357 at 2744.519 kb on + strand, within Rru_A2357 at 2744.519 kb on + strand, within Rru_A2357 at 2744.519 kb on + strand, within Rru_A2357 at 2744.520 kb on - strand, within Rru_A2357 at 2744.520 kb on - strand, within Rru_A2357 at 2744.520 kb on - strand, within Rru_A2357 at 2744.520 kb on - strand, within Rru_A2357 at 2744.520 kb on - strand, within Rru_A2357 at 2744.520 kb on - strand, within Rru_A2357 at 2744.520 kb on - strand, within Rru_A2357 at 2744.520 kb on - strand, within Rru_A2357 at 2744.520 kb on - strand, within Rru_A2357 at 2744.520 kb on - strand, within Rru_A2357 at 2744.757 kb on + strand, within Rru_A2357 at 2744.757 kb on + strand, within Rru_A2357 at 2744.757 kb on + strand, within Rru_A2357 at 2744.757 kb on + strand, within Rru_A2357 at 2744.757 kb on + strand, within Rru_A2357 at 2744.758 kb on - strand, within Rru_A2357 at 2744.758 kb on - strand, within Rru_A2357 at 2744.758 kb on - strand, within Rru_A2357 at 2745.034 kb on - strand at 2745.034 kb on - strand at 2745.034 kb on - strand at 2745.034 kb on - strand at 2745.034 kb on - strand at 2745.225 kb on - strand, within Rru_A2358 at 2745.323 kb on + strand, within Rru_A2358 at 2745.323 kb on + strand, within Rru_A2358 at 2745.386 kb on + strand, within Rru_A2358 at 2745.387 kb on - strand, within Rru_A2358 at 2745.677 kb on + strand, within Rru_A2358 at 2745.677 kb on + strand, within Rru_A2358 at 2745.677 kb on + strand, within Rru_A2358 at 2745.678 kb on - strand, within Rru_A2358 at 2745.678 kb on - strand, within Rru_A2358 at 2745.725 kb on + strand, within Rru_A2358 at 2745.725 kb on + strand, within Rru_A2358 at 2745.725 kb on + strand, within Rru_A2358 at 2745.726 kb on - strand, within Rru_A2358 at 2745.726 kb on - strand, within Rru_A2358 at 2745.726 kb on - strand, within Rru_A2358 at 2745.726 kb on - strand, within Rru_A2358 at 2745.726 kb on - strand, within Rru_A2358 at 2745.958 kb on + strand at 2745.958 kb on + strand at 2745.958 kb on + strand at 2746.746 kb on + strand, within Rru_A2359 at 2746.746 kb on + strand, within Rru_A2359 at 2746.746 kb on + strand, within Rru_A2359 at 2746.746 kb on + strand, within Rru_A2359 at 2746.746 kb on + strand, within Rru_A2359 at 2746.746 kb on + strand, within Rru_A2359 at 2746.746 kb on + strand, within Rru_A2359 at 2746.747 kb on - strand, within Rru_A2359 at 2746.747 kb on - strand, within Rru_A2359 at 2746.747 kb on - strand, within Rru_A2359 at 2746.747 kb on - strand, within Rru_A2359 at 2746.747 kb on - strand, within Rru_A2359 at 2746.747 kb on - strand, within Rru_A2359 at 2746.809 kb on + strand, within Rru_A2359 at 2746.809 kb on + strand, within Rru_A2359 at 2746.809 kb on + strand, within Rru_A2359 at 2746.809 kb on + strand, within Rru_A2359 at 2746.809 kb on + strand, within Rru_A2359 at 2746.810 kb on - strand, within Rru_A2359 at 2746.810 kb on - strand, within Rru_A2359 at 2746.812 kb on - strand, within Rru_A2359
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 2,744,256 + Rru_A2357 0.19 +0.3 2,744,256 + Rru_A2357 0.19 +0.0 2,744,256 + Rru_A2357 0.19 -0.0 2,744,257 - Rru_A2357 0.19 +1.0 2,744,257 - Rru_A2357 0.19 +2.3 2,744,257 - Rru_A2357 0.19 -0.0 2,744,257 - Rru_A2357 0.19 +1.0 2,744,257 - Rru_A2357 0.19 -0.0 2,744,265 + Rru_A2357 0.20 -0.0 2,744,297 + Rru_A2357 0.23 +1.0 2,744,298 - Rru_A2357 0.23 +0.8 2,744,298 - Rru_A2357 0.23 +1.4 2,744,298 - Rru_A2357 0.23 +0.5 2,744,298 - Rru_A2357 0.23 +1.3 2,744,481 + Rru_A2357 0.42 -0.0 2,744,481 + Rru_A2357 0.42 -1.1 2,744,482 - Rru_A2357 0.42 +0.5 2,744,482 - Rru_A2357 0.42 +0.4 2,744,516 + Rru_A2357 0.45 -0.0 2,744,519 + Rru_A2357 0.45 +0.4 2,744,519 + Rru_A2357 0.45 +1.0 2,744,519 + Rru_A2357 0.45 -0.1 2,744,520 - Rru_A2357 0.45 -0.4 2,744,520 - Rru_A2357 0.45 +0.2 2,744,520 - Rru_A2357 0.45 +1.1 2,744,520 - Rru_A2357 0.45 +0.3 2,744,520 - Rru_A2357 0.45 +0.9 2,744,520 - Rru_A2357 0.45 -0.0 2,744,520 - Rru_A2357 0.45 +0.9 2,744,520 - Rru_A2357 0.45 +1.6 2,744,520 - Rru_A2357 0.45 +1.5 2,744,520 - Rru_A2357 0.45 -0.0 2,744,757 + Rru_A2357 0.69 -0.6 2,744,757 + Rru_A2357 0.69 -0.0 2,744,757 + Rru_A2357 0.69 +0.5 2,744,757 + Rru_A2357 0.69 +0.2 2,744,757 + Rru_A2357 0.69 +1.0 2,744,758 - Rru_A2357 0.69 +0.5 2,744,758 - Rru_A2357 0.69 +1.0 2,744,758 - Rru_A2357 0.69 -0.0 2,745,034 - +0.5 2,745,034 - -0.0 2,745,034 - +0.1 2,745,034 - -0.0 2,745,034 - +0.7 2,745,225 - Rru_A2358 0.15 +0.2 2,745,323 + Rru_A2358 0.25 -0.0 2,745,323 + Rru_A2358 0.25 -0.0 2,745,386 + Rru_A2358 0.32 -0.0 2,745,387 - Rru_A2358 0.32 -0.0 2,745,677 + Rru_A2358 0.61 +0.5 2,745,677 + Rru_A2358 0.61 +0.7 2,745,677 + Rru_A2358 0.61 -0.0 2,745,678 - Rru_A2358 0.61 -0.3 2,745,678 - Rru_A2358 0.61 +0.2 2,745,725 + Rru_A2358 0.66 +0.4 2,745,725 + Rru_A2358 0.66 +0.1 2,745,725 + Rru_A2358 0.66 +0.2 2,745,726 - Rru_A2358 0.66 +0.7 2,745,726 - Rru_A2358 0.66 +0.6 2,745,726 - Rru_A2358 0.66 +0.4 2,745,726 - Rru_A2358 0.66 +0.8 2,745,726 - Rru_A2358 0.66 -0.0 2,745,958 + -0.0 2,745,958 + +0.2 2,745,958 + -1.0 2,746,746 + Rru_A2359 0.66 -0.0 2,746,746 + Rru_A2359 0.66 +0.4 2,746,746 + Rru_A2359 0.66 +0.4 2,746,746 + Rru_A2359 0.66 +0.5 2,746,746 + Rru_A2359 0.66 +0.7 2,746,746 + Rru_A2359 0.66 -0.1 2,746,746 + Rru_A2359 0.66 +0.2 2,746,747 - Rru_A2359 0.66 +0.8 2,746,747 - Rru_A2359 0.66 +0.5 2,746,747 - Rru_A2359 0.66 -1.5 2,746,747 - Rru_A2359 0.66 -0.0 2,746,747 - Rru_A2359 0.66 -0.0 2,746,747 - Rru_A2359 0.66 +0.5 2,746,809 + Rru_A2359 0.72 +1.0 2,746,809 + Rru_A2359 0.72 +1.1 2,746,809 + Rru_A2359 0.72 +0.3 2,746,809 + Rru_A2359 0.72 +1.0 2,746,809 + Rru_A2359 0.72 +0.7 2,746,810 - Rru_A2359 0.72 +1.5 2,746,810 - Rru_A2359 0.72 +0.8 2,746,812 - Rru_A2359 0.73 +1.2
Or see this region's nucleotide sequence