Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2328 and Rru_A2329 overlap by 4 nucleotides Rru_A2329 and Rru_A2330 are separated by 14 nucleotides Rru_A2330 and Rru_A2331 are separated by 11 nucleotides Rru_A2331 and Rru_A2332 overlap by 4 nucleotides
Rru_A2328: Rru_A2328 - hypothetical protein (NCBI), at 2,699,206 to 2,699,451
_A2328
Rru_A2329: Rru_A2329 - Cobyrinic acid a,c-diamide synthase (NCBI), at 2,699,448 to 2,700,227
_A2329
Rru_A2330: Rru_A2330 - Response regulator receiver domain protein (CheY) (NCBI), at 2,700,242 to 2,700,616
_A2330
Rru_A2331: Rru_A2331 - hypothetical protein (NCBI), at 2,700,628 to 2,701,341
_A2331
Rru_A2332: Rru_A2332 - Response regulator receiver domain protein (CheY) (NCBI), at 2,701,338 to 2,701,718
_A2332
Position (kb)
2700
2701 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2699.639 kb on + strand, within Rru_A2329 at 2699.639 kb on + strand, within Rru_A2329 at 2699.640 kb on - strand, within Rru_A2329 at 2699.640 kb on - strand, within Rru_A2329 at 2699.640 kb on - strand, within Rru_A2329 at 2699.640 kb on - strand, within Rru_A2329 at 2699.820 kb on - strand, within Rru_A2329 at 2699.820 kb on - strand, within Rru_A2329 at 2699.820 kb on - strand, within Rru_A2329 at 2700.044 kb on - strand, within Rru_A2329 at 2700.168 kb on + strand at 2700.168 kb on + strand at 2700.169 kb on - strand at 2700.226 kb on - strand at 2700.255 kb on + strand at 2700.256 kb on - strand at 2700.409 kb on + strand, within Rru_A2330 at 2700.409 kb on + strand, within Rru_A2330 at 2700.409 kb on + strand, within Rru_A2330 at 2700.410 kb on - strand, within Rru_A2330 at 2700.410 kb on - strand, within Rru_A2330 at 2700.410 kb on - strand, within Rru_A2330 at 2700.410 kb on - strand, within Rru_A2330 at 2700.781 kb on + strand, within Rru_A2331 at 2700.781 kb on + strand, within Rru_A2331 at 2700.882 kb on - strand, within Rru_A2331 at 2700.882 kb on - strand, within Rru_A2331 at 2700.882 kb on - strand, within Rru_A2331 at 2700.882 kb on - strand, within Rru_A2331 at 2700.882 kb on - strand, within Rru_A2331 at 2701.103 kb on + strand, within Rru_A2331 at 2701.104 kb on - strand, within Rru_A2331 at 2701.104 kb on - strand, within Rru_A2331 at 2701.104 kb on - strand, within Rru_A2331 at 2701.104 kb on - strand, within Rru_A2331 at 2701.104 kb on - strand, within Rru_A2331 at 2701.415 kb on + strand, within Rru_A2332 at 2701.416 kb on - strand, within Rru_A2332 at 2701.422 kb on + strand, within Rru_A2332 at 2701.423 kb on - strand, within Rru_A2332 at 2701.423 kb on - strand, within Rru_A2332 at 2701.423 kb on - strand, within Rru_A2332 at 2701.423 kb on - strand, within Rru_A2332
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 2,699,639 + Rru_A2329 0.24 -1.0 2,699,639 + Rru_A2329 0.24 -0.0 2,699,640 - Rru_A2329 0.25 -0.0 2,699,640 - Rru_A2329 0.25 +0.4 2,699,640 - Rru_A2329 0.25 +1.1 2,699,640 - Rru_A2329 0.25 +0.9 2,699,820 - Rru_A2329 0.48 +2.1 2,699,820 - Rru_A2329 0.48 -0.0 2,699,820 - Rru_A2329 0.48 +0.3 2,700,044 - Rru_A2329 0.76 -0.0 2,700,168 + -0.3 2,700,168 + +0.7 2,700,169 - +0.9 2,700,226 - +0.1 2,700,255 + -0.0 2,700,256 - +0.8 2,700,409 + Rru_A2330 0.45 -0.0 2,700,409 + Rru_A2330 0.45 -0.5 2,700,409 + Rru_A2330 0.45 -0.0 2,700,410 - Rru_A2330 0.45 -0.6 2,700,410 - Rru_A2330 0.45 +0.3 2,700,410 - Rru_A2330 0.45 +1.1 2,700,410 - Rru_A2330 0.45 -0.5 2,700,781 + Rru_A2331 0.21 +0.3 2,700,781 + Rru_A2331 0.21 -0.0 2,700,882 - Rru_A2331 0.36 -0.0 2,700,882 - Rru_A2331 0.36 -0.6 2,700,882 - Rru_A2331 0.36 -1.6 2,700,882 - Rru_A2331 0.36 -1.4 2,700,882 - Rru_A2331 0.36 +0.5 2,701,103 + Rru_A2331 0.67 -1.8 2,701,104 - Rru_A2331 0.67 +0.8 2,701,104 - Rru_A2331 0.67 +1.4 2,701,104 - Rru_A2331 0.67 -0.0 2,701,104 - Rru_A2331 0.67 +0.5 2,701,104 - Rru_A2331 0.67 -0.0 2,701,415 + Rru_A2332 0.20 +0.4 2,701,416 - Rru_A2332 0.20 -2.0 2,701,422 + Rru_A2332 0.22 -0.0 2,701,423 - Rru_A2332 0.22 -0.0 2,701,423 - Rru_A2332 0.22 +0.5 2,701,423 - Rru_A2332 0.22 +2.4 2,701,423 - Rru_A2332 0.22 -0.0
Or see this region's nucleotide sequence