Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2324 and Rru_A2325 are separated by 35 nucleotides Rru_A2325 and Rru_A2326 are separated by 5 nucleotides Rru_A2326 and Rru_A2327 overlap by 4 nucleotides
Rru_A2324: Rru_A2324 - PBS lyase HEAT-like repeat (NCBI), at 2,694,801 to 2,695,349
_A2324
Rru_A2325: Rru_A2325 - MCP methyltransferase, CheR-type (NCBI), at 2,695,385 to 2,696,215
_A2325
Rru_A2326: Rru_A2326 - Response regulator receiver domain protein (CheY) (NCBI), at 2,696,221 to 2,696,619
_A2326
Rru_A2327: Rru_A2327 - CheA Signal Transduction Histidine Kinases (STHK) (NCBI), at 2,696,616 to 2,699,204
_A2327
Position (kb)
2696
2697 Strain fitness (log2 ratio)
-1
0
1
2 at 2695.431 kb on - strand at 2695.556 kb on - strand, within Rru_A2325 at 2695.610 kb on + strand, within Rru_A2325 at 2695.611 kb on - strand, within Rru_A2325 at 2695.628 kb on + strand, within Rru_A2325 at 2695.629 kb on - strand, within Rru_A2325 at 2695.783 kb on + strand, within Rru_A2325 at 2695.784 kb on - strand, within Rru_A2325 at 2695.784 kb on - strand, within Rru_A2325 at 2695.902 kb on - strand, within Rru_A2325 at 2695.928 kb on + strand, within Rru_A2325 at 2695.928 kb on + strand, within Rru_A2325 at 2695.929 kb on - strand, within Rru_A2325 at 2696.161 kb on - strand at 2696.196 kb on - strand at 2696.280 kb on - strand, within Rru_A2326 at 2696.280 kb on - strand, within Rru_A2326 at 2696.280 kb on - strand, within Rru_A2326 at 2696.546 kb on - strand, within Rru_A2326 at 2696.546 kb on - strand, within Rru_A2326 at 2697.144 kb on + strand, within Rru_A2327 at 2697.145 kb on - strand, within Rru_A2327 at 2697.145 kb on - strand, within Rru_A2327 at 2697.145 kb on - strand, within Rru_A2327 at 2697.205 kb on + strand, within Rru_A2327 at 2697.206 kb on - strand, within Rru_A2327 at 2697.206 kb on - strand, within Rru_A2327 at 2697.206 kb on - strand, within Rru_A2327 at 2697.206 kb on - strand, within Rru_A2327 at 2697.342 kb on + strand, within Rru_A2327 at 2697.369 kb on - strand, within Rru_A2327 at 2697.369 kb on - strand, within Rru_A2327 at 2697.508 kb on + strand, within Rru_A2327 at 2697.509 kb on - strand, within Rru_A2327 at 2697.509 kb on - strand, within Rru_A2327 at 2697.509 kb on - strand, within Rru_A2327
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 2,695,431 - +1.4 2,695,556 - Rru_A2325 0.21 -0.0 2,695,610 + Rru_A2325 0.27 +0.0 2,695,611 - Rru_A2325 0.27 -0.0 2,695,628 + Rru_A2325 0.29 -0.0 2,695,629 - Rru_A2325 0.29 -0.0 2,695,783 + Rru_A2325 0.48 -0.6 2,695,784 - Rru_A2325 0.48 +0.7 2,695,784 - Rru_A2325 0.48 +0.6 2,695,902 - Rru_A2325 0.62 +0.6 2,695,928 + Rru_A2325 0.65 -0.0 2,695,928 + Rru_A2325 0.65 +0.6 2,695,929 - Rru_A2325 0.65 +0.4 2,696,161 - -0.0 2,696,196 - +0.2 2,696,280 - Rru_A2326 0.15 -0.0 2,696,280 - Rru_A2326 0.15 +0.5 2,696,280 - Rru_A2326 0.15 -0.4 2,696,546 - Rru_A2326 0.81 -0.0 2,696,546 - Rru_A2326 0.81 -0.0 2,697,144 + Rru_A2327 0.20 +0.1 2,697,145 - Rru_A2327 0.20 +0.1 2,697,145 - Rru_A2327 0.20 -1.6 2,697,145 - Rru_A2327 0.20 +0.3 2,697,205 + Rru_A2327 0.23 -0.0 2,697,206 - Rru_A2327 0.23 +1.0 2,697,206 - Rru_A2327 0.23 -0.0 2,697,206 - Rru_A2327 0.23 -0.5 2,697,206 - Rru_A2327 0.23 +2.2 2,697,342 + Rru_A2327 0.28 +0.3 2,697,369 - Rru_A2327 0.29 +0.2 2,697,369 - Rru_A2327 0.29 -0.0 2,697,508 + Rru_A2327 0.34 +0.6 2,697,509 - Rru_A2327 0.34 -0.4 2,697,509 - Rru_A2327 0.34 -0.0 2,697,509 - Rru_A2327 0.34 -0.0
Or see this region's nucleotide sequence