Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2321 and Rru_A2322 are separated by 30 nucleotides Rru_A2322 and Rru_A2323 are separated by 138 nucleotides
Rru_A2321: Rru_A2321 - chemotaxis sensory transducer (NCBI), at 2,689,937 to 2,691,865
_A2321
Rru_A2322: Rru_A2322 - CheW protein (NCBI), at 2,691,896 to 2,693,497
_A2322
Rru_A2323: Rru_A2323 - Two component CheB methylesterase (NCBI), at 2,693,636 to 2,694,748
_A2323
Position (kb)
2691
2692
2693
2694 Strain fitness (log2 ratio)
-2
-1
0
1 at 2691.371 kb on - strand, within Rru_A2321 at 2691.371 kb on - strand, within Rru_A2321 at 2691.371 kb on - strand, within Rru_A2321 at 2691.371 kb on - strand, within Rru_A2321 at 2691.371 kb on - strand, within Rru_A2321 at 2691.371 kb on - strand, within Rru_A2321 at 2691.491 kb on - strand, within Rru_A2321 at 2691.491 kb on - strand, within Rru_A2321 at 2691.556 kb on - strand, within Rru_A2321 at 2691.556 kb on - strand, within Rru_A2321 at 2691.883 kb on + strand at 2691.883 kb on + strand at 2691.883 kb on + strand at 2691.884 kb on - strand at 2691.884 kb on - strand at 2691.884 kb on - strand at 2691.884 kb on - strand at 2691.884 kb on - strand at 2691.894 kb on + strand at 2691.894 kb on + strand at 2691.894 kb on + strand at 2691.894 kb on + strand at 2691.894 kb on + strand at 2691.894 kb on + strand at 2691.894 kb on + strand at 2691.894 kb on + strand at 2691.894 kb on + strand at 2691.895 kb on - strand at 2691.895 kb on - strand at 2691.895 kb on - strand at 2691.895 kb on - strand at 2691.895 kb on - strand at 2691.895 kb on - strand at 2691.895 kb on - strand at 2692.285 kb on + strand, within Rru_A2322 at 2692.544 kb on + strand, within Rru_A2322 at 2692.545 kb on - strand, within Rru_A2322 at 2693.021 kb on + strand, within Rru_A2322 at 2693.081 kb on + strand, within Rru_A2322 at 2693.081 kb on + strand, within Rru_A2322 at 2693.270 kb on + strand, within Rru_A2322 at 2693.270 kb on + strand, within Rru_A2322 at 2693.495 kb on + strand at 2693.495 kb on + strand at 2693.526 kb on + strand at 2693.559 kb on + strand at 2693.622 kb on - strand at 2694.028 kb on + strand, within Rru_A2323 at 2694.029 kb on - strand, within Rru_A2323 at 2694.297 kb on + strand, within Rru_A2323 at 2694.297 kb on + strand, within Rru_A2323 at 2694.297 kb on + strand, within Rru_A2323 at 2694.297 kb on + strand, within Rru_A2323 at 2694.297 kb on + strand, within Rru_A2323 at 2694.297 kb on + strand, within Rru_A2323 at 2694.298 kb on - strand, within Rru_A2323 at 2694.298 kb on - strand, within Rru_A2323 at 2694.298 kb on - strand, within Rru_A2323 at 2694.298 kb on - strand, within Rru_A2323 at 2694.298 kb on - strand, within Rru_A2323 at 2694.298 kb on - strand, within Rru_A2323 at 2694.298 kb on - strand, within Rru_A2323 at 2694.298 kb on - strand, within Rru_A2323 at 2694.357 kb on - strand, within Rru_A2323 at 2694.440 kb on + strand, within Rru_A2323 at 2694.440 kb on + strand, within Rru_A2323 at 2694.441 kb on - strand, within Rru_A2323 at 2694.441 kb on - strand, within Rru_A2323 at 2694.441 kb on - strand, within Rru_A2323
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 2,691,371 - Rru_A2321 0.74 -0.0 2,691,371 - Rru_A2321 0.74 +0.1 2,691,371 - Rru_A2321 0.74 -0.5 2,691,371 - Rru_A2321 0.74 -0.0 2,691,371 - Rru_A2321 0.74 -0.0 2,691,371 - Rru_A2321 0.74 -0.3 2,691,491 - Rru_A2321 0.81 +0.0 2,691,491 - Rru_A2321 0.81 +0.4 2,691,556 - Rru_A2321 0.84 -0.0 2,691,556 - Rru_A2321 0.84 +0.0 2,691,883 + +0.3 2,691,883 + +1.0 2,691,883 + +1.6 2,691,884 - +0.4 2,691,884 - -0.0 2,691,884 - -0.4 2,691,884 - -1.0 2,691,884 - -0.0 2,691,894 + +0.5 2,691,894 + +0.2 2,691,894 + -0.0 2,691,894 + -0.9 2,691,894 + +0.1 2,691,894 + -0.0 2,691,894 + +0.2 2,691,894 + +1.0 2,691,894 + -0.0 2,691,895 - -0.0 2,691,895 - +0.4 2,691,895 - +1.1 2,691,895 - +0.5 2,691,895 - +0.3 2,691,895 - +1.1 2,691,895 - +0.9 2,692,285 + Rru_A2322 0.24 -0.0 2,692,544 + Rru_A2322 0.40 -1.0 2,692,545 - Rru_A2322 0.41 +1.1 2,693,021 + Rru_A2322 0.70 +0.7 2,693,081 + Rru_A2322 0.74 -0.0 2,693,081 + Rru_A2322 0.74 -0.0 2,693,270 + Rru_A2322 0.86 +0.6 2,693,270 + Rru_A2322 0.86 -1.0 2,693,495 + -0.0 2,693,495 + -0.0 2,693,526 + -0.0 2,693,559 + +0.5 2,693,622 - +0.2 2,694,028 + Rru_A2323 0.35 -1.6 2,694,029 - Rru_A2323 0.35 +0.6 2,694,297 + Rru_A2323 0.59 -0.2 2,694,297 + Rru_A2323 0.59 +0.6 2,694,297 + Rru_A2323 0.59 -0.0 2,694,297 + Rru_A2323 0.59 +0.7 2,694,297 + Rru_A2323 0.59 -0.0 2,694,297 + Rru_A2323 0.59 +0.5 2,694,298 - Rru_A2323 0.59 -0.0 2,694,298 - Rru_A2323 0.59 +0.7 2,694,298 - Rru_A2323 0.59 +0.9 2,694,298 - Rru_A2323 0.59 +0.6 2,694,298 - Rru_A2323 0.59 -0.0 2,694,298 - Rru_A2323 0.59 +1.0 2,694,298 - Rru_A2323 0.59 -0.0 2,694,298 - Rru_A2323 0.59 +0.8 2,694,357 - Rru_A2323 0.65 -0.0 2,694,440 + Rru_A2323 0.72 -2.2 2,694,440 + Rru_A2323 0.72 -0.0 2,694,441 - Rru_A2323 0.72 +1.0 2,694,441 - Rru_A2323 0.72 -0.0 2,694,441 - Rru_A2323 0.72 -0.0
Or see this region's nucleotide sequence