Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2302 and Rru_A2303 are separated by 144 nucleotides Rru_A2303 and Rru_A2304 are separated by 302 nucleotides
Rru_A2302: Rru_A2302 - Periplasmic binding protein/LacI transcriptional regulator (NCBI), at 2,663,888 to 2,664,937
_A2302
Rru_A2303: Rru_A2303 - Deoxyribose-phosphate aldolase (NCBI), at 2,665,082 to 2,665,798
_A2303
Rru_A2304: Rru_A2304 - Transcriptional Regulator, DeoR family (NCBI), at 2,666,101 to 2,666,880
_A2304
Position (kb)
2665
2666 Strain fitness (log2 ratio)
-1
0
1 at 2664.105 kb on + strand, within Rru_A2302 at 2664.105 kb on + strand, within Rru_A2302 at 2664.105 kb on + strand, within Rru_A2302 at 2664.106 kb on - strand, within Rru_A2302 at 2664.129 kb on + strand, within Rru_A2302 at 2664.129 kb on + strand, within Rru_A2302 at 2664.129 kb on + strand, within Rru_A2302 at 2664.261 kb on + strand, within Rru_A2302 at 2664.261 kb on + strand, within Rru_A2302 at 2664.262 kb on - strand, within Rru_A2302 at 2664.292 kb on - strand, within Rru_A2302 at 2664.366 kb on + strand, within Rru_A2302 at 2664.366 kb on + strand, within Rru_A2302 at 2664.432 kb on + strand, within Rru_A2302 at 2664.432 kb on + strand, within Rru_A2302 at 2664.432 kb on + strand, within Rru_A2302 at 2664.432 kb on + strand, within Rru_A2302 at 2664.433 kb on - strand, within Rru_A2302 at 2664.433 kb on - strand, within Rru_A2302 at 2664.433 kb on - strand, within Rru_A2302 at 2664.433 kb on - strand, within Rru_A2302 at 2664.433 kb on - strand, within Rru_A2302 at 2664.453 kb on + strand, within Rru_A2302 at 2664.453 kb on + strand, within Rru_A2302 at 2664.453 kb on + strand, within Rru_A2302 at 2664.453 kb on + strand, within Rru_A2302 at 2664.453 kb on + strand, within Rru_A2302 at 2664.454 kb on - strand, within Rru_A2302 at 2664.454 kb on - strand, within Rru_A2302 at 2664.487 kb on - strand, within Rru_A2302 at 2664.808 kb on - strand, within Rru_A2302 at 2664.808 kb on - strand, within Rru_A2302 at 2664.923 kb on + strand at 2664.924 kb on - strand at 2664.924 kb on - strand at 2665.084 kb on - strand at 2665.087 kb on - strand at 2665.087 kb on - strand at 2665.493 kb on - strand, within Rru_A2303 at 2665.742 kb on - strand at 2665.742 kb on - strand at 2665.743 kb on + strand at 2665.744 kb on - strand at 2665.744 kb on - strand at 2665.744 kb on - strand at 2665.744 kb on - strand at 2665.922 kb on + strand at 2665.922 kb on + strand at 2665.922 kb on + strand at 2665.923 kb on - strand at 2665.982 kb on + strand at 2665.984 kb on + strand at 2666.059 kb on + strand at 2666.059 kb on + strand at 2666.067 kb on + strand at 2666.067 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 2,664,105 + Rru_A2302 0.21 +0.5 2,664,105 + Rru_A2302 0.21 +0.3 2,664,105 + Rru_A2302 0.21 +0.4 2,664,106 - Rru_A2302 0.21 -0.3 2,664,129 + Rru_A2302 0.23 +0.3 2,664,129 + Rru_A2302 0.23 +0.3 2,664,129 + Rru_A2302 0.23 -0.0 2,664,261 + Rru_A2302 0.36 -0.3 2,664,261 + Rru_A2302 0.36 -1.6 2,664,262 - Rru_A2302 0.36 +0.3 2,664,292 - Rru_A2302 0.38 +1.7 2,664,366 + Rru_A2302 0.46 -1.1 2,664,366 + Rru_A2302 0.46 +0.4 2,664,432 + Rru_A2302 0.52 -0.0 2,664,432 + Rru_A2302 0.52 +0.7 2,664,432 + Rru_A2302 0.52 +0.7 2,664,432 + Rru_A2302 0.52 +0.3 2,664,433 - Rru_A2302 0.52 -1.4 2,664,433 - Rru_A2302 0.52 +0.7 2,664,433 - Rru_A2302 0.52 +1.1 2,664,433 - Rru_A2302 0.52 -0.0 2,664,433 - Rru_A2302 0.52 -0.0 2,664,453 + Rru_A2302 0.54 +0.2 2,664,453 + Rru_A2302 0.54 -1.0 2,664,453 + Rru_A2302 0.54 +0.3 2,664,453 + Rru_A2302 0.54 +0.5 2,664,453 + Rru_A2302 0.54 +0.1 2,664,454 - Rru_A2302 0.54 -0.0 2,664,454 - Rru_A2302 0.54 +0.6 2,664,487 - Rru_A2302 0.57 +1.0 2,664,808 - Rru_A2302 0.88 +0.4 2,664,808 - Rru_A2302 0.88 -0.0 2,664,923 + -1.6 2,664,924 - +0.2 2,664,924 - +0.2 2,665,084 - -0.0 2,665,087 - -0.0 2,665,087 - -1.0 2,665,493 - Rru_A2303 0.57 -0.9 2,665,742 - -1.2 2,665,742 - -0.0 2,665,743 + +1.5 2,665,744 - -0.4 2,665,744 - -0.0 2,665,744 - -0.0 2,665,744 - +0.3 2,665,922 + -0.5 2,665,922 + -0.0 2,665,922 + +0.9 2,665,923 - -0.0 2,665,982 + +0.1 2,665,984 + +1.4 2,666,059 + -0.0 2,666,059 + +0.6 2,666,067 + +0.2 2,666,067 + -0.0
Or see this region's nucleotide sequence