Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2272 and Rru_A2273 are separated by 57 nucleotides Rru_A2273 and Rru_A2274 overlap by 4 nucleotides Rru_A2274 and Rru_A2275 overlap by 4 nucleotides Rru_A2275 and Rru_A2276 overlap by 4 nucleotides
Rru_A2272: Rru_A2272 - TspO and MBR related proteins (NCBI), at 2,631,496 to 2,632,062
_A2272
Rru_A2273: Rru_A2273 - ABC transporter component (NCBI), at 2,632,120 to 2,632,953
_A2273
Rru_A2274: Rru_A2274 - ABC transporter component (NCBI), at 2,632,950 to 2,633,735
_A2274
Rru_A2275: Rru_A2275 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,633,732 to 2,634,631
_A2275
Rru_A2276: Rru_A2276 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,634,628 to 2,635,572
_A2276
Position (kb)
2632
2633
2634 Strain fitness (log2 ratio)
-1
0
1 at 2631.956 kb on - strand, within Rru_A2272 at 2632.015 kb on + strand at 2632.016 kb on - strand at 2632.074 kb on + strand at 2632.074 kb on + strand at 2632.096 kb on + strand at 2632.097 kb on - strand at 2632.337 kb on + strand, within Rru_A2273 at 2632.337 kb on + strand, within Rru_A2273 at 2632.337 kb on + strand, within Rru_A2273 at 2632.337 kb on + strand, within Rru_A2273 at 2632.337 kb on + strand, within Rru_A2273 at 2632.337 kb on + strand, within Rru_A2273 at 2632.338 kb on - strand, within Rru_A2273 at 2632.338 kb on - strand, within Rru_A2273 at 2632.549 kb on + strand, within Rru_A2273 at 2632.550 kb on - strand, within Rru_A2273 at 2632.914 kb on - strand at 2632.957 kb on - strand at 2632.972 kb on + strand at 2632.973 kb on - strand at 2634.120 kb on + strand, within Rru_A2275 at 2634.120 kb on + strand, within Rru_A2275 at 2634.121 kb on - strand, within Rru_A2275 at 2634.677 kb on + strand at 2634.677 kb on + strand at 2634.677 kb on + strand at 2634.677 kb on + strand at 2634.677 kb on + strand at 2634.678 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 2,631,956 - Rru_A2272 0.81 -0.0 2,632,015 + -0.0 2,632,016 - -0.3 2,632,074 + -0.0 2,632,074 + -0.0 2,632,096 + -0.5 2,632,097 - -1.0 2,632,337 + Rru_A2273 0.26 +0.1 2,632,337 + Rru_A2273 0.26 -0.2 2,632,337 + Rru_A2273 0.26 +0.1 2,632,337 + Rru_A2273 0.26 -0.0 2,632,337 + Rru_A2273 0.26 -0.0 2,632,337 + Rru_A2273 0.26 -0.0 2,632,338 - Rru_A2273 0.26 -0.0 2,632,338 - Rru_A2273 0.26 +1.0 2,632,549 + Rru_A2273 0.51 +0.7 2,632,550 - Rru_A2273 0.52 -1.0 2,632,914 - +0.9 2,632,957 - +1.1 2,632,972 + -0.0 2,632,973 - +0.8 2,634,120 + Rru_A2275 0.43 -0.3 2,634,120 + Rru_A2275 0.43 -0.4 2,634,121 - Rru_A2275 0.43 +0.1 2,634,677 + -0.0 2,634,677 + +0.5 2,634,677 + +0.8 2,634,677 + -0.0 2,634,677 + -0.2 2,634,678 - -1.0
Or see this region's nucleotide sequence