Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2206 and Rru_A2207 are separated by 74 nucleotides Rru_A2207 and Rru_A2208 are separated by 172 nucleotides Rru_A2208 and Rru_A2209 are separated by 186 nucleotides
Rru_A2206: Rru_A2206 - tartrate dehydrogenase (NCBI), at 2,561,938 to 2,563,584
_A2206
Rru_A2207: Rru_A2207 - hypothetical protein (NCBI), at 2,563,659 to 2,564,024
_A2207
Rru_A2208: Rru_A2208 - hypothetical protein (NCBI), at 2,564,197 to 2,564,457
_A2208
Rru_A2209: Rru_A2209 - AsmA (NCBI), at 2,564,644 to 2,567,877
_A2209
Position (kb)
2564
2565 Strain fitness (log2 ratio)
-2
-1
0
1 at 2563.684 kb on - strand at 2563.765 kb on - strand, within Rru_A2207 at 2563.765 kb on - strand, within Rru_A2207 at 2563.765 kb on - strand, within Rru_A2207 at 2563.843 kb on - strand, within Rru_A2207 at 2563.843 kb on - strand, within Rru_A2207 at 2563.843 kb on - strand, within Rru_A2207 at 2564.428 kb on + strand, within Rru_A2208 at 2564.428 kb on + strand, within Rru_A2208 at 2564.428 kb on + strand, within Rru_A2208 at 2564.428 kb on + strand, within Rru_A2208 at 2564.428 kb on + strand, within Rru_A2208 at 2564.428 kb on + strand, within Rru_A2208 at 2564.429 kb on - strand, within Rru_A2208 at 2564.429 kb on - strand, within Rru_A2208 at 2564.429 kb on - strand, within Rru_A2208 at 2564.429 kb on - strand, within Rru_A2208 at 2564.429 kb on - strand, within Rru_A2208 at 2564.429 kb on - strand, within Rru_A2208 at 2564.429 kb on - strand, within Rru_A2208 at 2564.472 kb on + strand at 2564.594 kb on + strand at 2564.793 kb on + strand at 2564.793 kb on + strand at 2564.793 kb on + strand at 2564.793 kb on + strand at 2565.158 kb on + strand, within Rru_A2209 at 2565.158 kb on + strand, within Rru_A2209 at 2565.158 kb on + strand, within Rru_A2209 at 2565.198 kb on + strand, within Rru_A2209 at 2565.198 kb on + strand, within Rru_A2209 at 2565.199 kb on - strand, within Rru_A2209 at 2565.199 kb on - strand, within Rru_A2209 at 2565.199 kb on - strand, within Rru_A2209 at 2565.200 kb on + strand, within Rru_A2209 at 2565.200 kb on + strand, within Rru_A2209 at 2565.200 kb on + strand, within Rru_A2209 at 2565.200 kb on + strand, within Rru_A2209 at 2565.200 kb on + strand, within Rru_A2209 at 2565.201 kb on - strand, within Rru_A2209 at 2565.254 kb on + strand, within Rru_A2209 at 2565.341 kb on + strand, within Rru_A2209 at 2565.342 kb on - strand, within Rru_A2209
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 2,563,684 - -1.0 2,563,765 - Rru_A2207 0.29 +1.1 2,563,765 - Rru_A2207 0.29 -0.0 2,563,765 - Rru_A2207 0.29 +0.9 2,563,843 - Rru_A2207 0.50 +0.8 2,563,843 - Rru_A2207 0.50 +0.7 2,563,843 - Rru_A2207 0.50 +0.4 2,564,428 + Rru_A2208 0.89 -0.0 2,564,428 + Rru_A2208 0.89 +1.3 2,564,428 + Rru_A2208 0.89 +1.4 2,564,428 + Rru_A2208 0.89 +1.3 2,564,428 + Rru_A2208 0.89 -0.0 2,564,428 + Rru_A2208 0.89 -0.0 2,564,429 - Rru_A2208 0.89 +0.5 2,564,429 - Rru_A2208 0.89 +1.5 2,564,429 - Rru_A2208 0.89 +0.6 2,564,429 - Rru_A2208 0.89 +1.4 2,564,429 - Rru_A2208 0.89 +0.6 2,564,429 - Rru_A2208 0.89 -1.6 2,564,429 - Rru_A2208 0.89 +1.7 2,564,472 + +1.2 2,564,594 + +0.7 2,564,793 + -0.0 2,564,793 + -0.8 2,564,793 + +0.6 2,564,793 + +0.4 2,565,158 + Rru_A2209 0.16 +0.4 2,565,158 + Rru_A2209 0.16 +0.6 2,565,158 + Rru_A2209 0.16 +0.5 2,565,198 + Rru_A2209 0.17 -1.7 2,565,198 + Rru_A2209 0.17 +0.5 2,565,199 - Rru_A2209 0.17 +1.3 2,565,199 - Rru_A2209 0.17 +1.3 2,565,199 - Rru_A2209 0.17 +0.3 2,565,200 + Rru_A2209 0.17 -0.1 2,565,200 + Rru_A2209 0.17 -0.0 2,565,200 + Rru_A2209 0.17 -0.0 2,565,200 + Rru_A2209 0.17 -0.0 2,565,200 + Rru_A2209 0.17 -2.4 2,565,201 - Rru_A2209 0.17 -0.0 2,565,254 + Rru_A2209 0.19 -0.0 2,565,341 + Rru_A2209 0.22 -0.6 2,565,342 - Rru_A2209 0.22 +0.9
Or see this region's nucleotide sequence