Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2176

Experiment: acetate; Light intensity 9 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2175 and Rru_A2176 overlap by 11 nucleotidesRru_A2176 and Rru_A2177 are separated by 5 nucleotides Rru_A2175: Rru_A2175 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like (NCBI), at 2,525,937 to 2,526,971 _A2175 Rru_A2176: Rru_A2176 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,526,961 to 2,527,935 _A2176 Rru_A2177: Rru_A2177 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 2,527,941 to 2,529,032 _A2177 Position (kb) 2526 2527 2528Strain fitness (log2 ratio) -2 -1 0 1 2at 2526.014 kb on - strandat 2526.014 kb on - strandat 2526.209 kb on + strand, within Rru_A2175at 2526.210 kb on - strand, within Rru_A2175at 2526.210 kb on - strand, within Rru_A2175at 2526.211 kb on + strand, within Rru_A2175at 2526.211 kb on + strand, within Rru_A2175at 2526.211 kb on + strand, within Rru_A2175at 2526.211 kb on + strand, within Rru_A2175at 2526.211 kb on + strand, within Rru_A2175at 2526.212 kb on - strand, within Rru_A2175at 2526.274 kb on + strand, within Rru_A2175at 2526.274 kb on + strand, within Rru_A2175at 2526.274 kb on + strand, within Rru_A2175at 2526.274 kb on + strand, within Rru_A2175at 2526.275 kb on - strand, within Rru_A2175at 2526.275 kb on - strand, within Rru_A2175at 2526.275 kb on - strand, within Rru_A2175at 2526.275 kb on - strand, within Rru_A2175at 2526.275 kb on - strand, within Rru_A2175at 2526.275 kb on - strand, within Rru_A2175at 2526.599 kb on + strand, within Rru_A2175at 2526.998 kb on + strandat 2526.998 kb on + strandat 2526.999 kb on - strandat 2527.046 kb on + strandat 2527.047 kb on - strandat 2527.097 kb on + strand, within Rru_A2176at 2527.097 kb on + strand, within Rru_A2176at 2527.098 kb on - strand, within Rru_A2176at 2527.098 kb on - strand, within Rru_A2176at 2527.098 kb on - strand, within Rru_A2176at 2527.098 kb on - strand, within Rru_A2176at 2527.325 kb on + strand, within Rru_A2176at 2527.337 kb on + strand, within Rru_A2176at 2527.337 kb on + strand, within Rru_A2176at 2527.337 kb on + strand, within Rru_A2176at 2527.338 kb on - strand, within Rru_A2176at 2527.338 kb on - strand, within Rru_A2176at 2527.739 kb on + strand, within Rru_A2176at 2528.019 kb on + strandat 2528.019 kb on + strandat 2528.020 kb on - strandat 2528.065 kb on + strand, within Rru_A2177at 2528.065 kb on + strand, within Rru_A2177at 2528.121 kb on + strand, within Rru_A2177at 2528.122 kb on - strand, within Rru_A2177at 2528.122 kb on - strand, within Rru_A2177at 2528.162 kb on + strand, within Rru_A2177at 2528.162 kb on + strand, within Rru_A2177at 2528.163 kb on - strand, within Rru_A2177at 2528.163 kb on - strand, within Rru_A2177at 2528.217 kb on + strand, within Rru_A2177at 2528.218 kb on - strand, within Rru_A2177at 2528.329 kb on + strand, within Rru_A2177at 2528.338 kb on + strand, within Rru_A2177at 2528.338 kb on + strand, within Rru_A2177at 2528.338 kb on + strand, within Rru_A2177at 2528.338 kb on + strand, within Rru_A2177at 2528.338 kb on + strand, within Rru_A2177at 2528.339 kb on - strand, within Rru_A2177at 2528.339 kb on - strand, within Rru_A2177at 2528.453 kb on - strand, within Rru_A2177at 2528.453 kb on - strand, within Rru_A2177at 2528.453 kb on - strand, within Rru_A2177at 2528.453 kb on - strand, within Rru_A2177at 2528.490 kb on + strand, within Rru_A2177at 2528.490 kb on + strand, within Rru_A2177at 2528.491 kb on - strand, within Rru_A2177at 2528.655 kb on - strand, within Rru_A2177at 2528.655 kb on - strand, within Rru_A2177at 2528.655 kb on - strand, within Rru_A2177at 2528.655 kb on - strand, within Rru_A2177at 2528.656 kb on + strand, within Rru_A2177at 2528.656 kb on + strand, within Rru_A2177at 2528.656 kb on + strand, within Rru_A2177at 2528.656 kb on + strand, within Rru_A2177at 2528.656 kb on + strand, within Rru_A2177at 2528.656 kb on + strand, within Rru_A2177at 2528.656 kb on + strand, within Rru_A2177at 2528.656 kb on + strand, within Rru_A2177at 2528.657 kb on - strand, within Rru_A2177at 2528.657 kb on - strand, within Rru_A2177at 2528.657 kb on - strand, within Rru_A2177at 2528.657 kb on - strand, within Rru_A2177at 2528.809 kb on + strand, within Rru_A2177at 2528.809 kb on + strand, within Rru_A2177at 2528.810 kb on - strand, within Rru_A2177at 2528.810 kb on - strand, within Rru_A2177

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM
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2,526,014 - -0.6
2,526,014 - -0.0
2,526,209 + Rru_A2175 0.26 +0.0
2,526,210 - Rru_A2175 0.26 +0.3
2,526,210 - Rru_A2175 0.26 -0.0
2,526,211 + Rru_A2175 0.26 +1.5
2,526,211 + Rru_A2175 0.26 -0.9
2,526,211 + Rru_A2175 0.26 +0.2
2,526,211 + Rru_A2175 0.26 +0.5
2,526,211 + Rru_A2175 0.26 -0.0
2,526,212 - Rru_A2175 0.27 +0.5
2,526,274 + Rru_A2175 0.33 -1.0
2,526,274 + Rru_A2175 0.33 +0.8
2,526,274 + Rru_A2175 0.33 +0.7
2,526,274 + Rru_A2175 0.33 +0.3
2,526,275 - Rru_A2175 0.33 -1.4
2,526,275 - Rru_A2175 0.33 -0.0
2,526,275 - Rru_A2175 0.33 +0.4
2,526,275 - Rru_A2175 0.33 +0.1
2,526,275 - Rru_A2175 0.33 +1.6
2,526,275 - Rru_A2175 0.33 +1.3
2,526,599 + Rru_A2175 0.64 +0.3
2,526,998 + +0.4
2,526,998 + -0.0
2,526,999 - +0.3
2,527,046 + -0.4
2,527,047 - +0.7
2,527,097 + Rru_A2176 0.14 -0.0
2,527,097 + Rru_A2176 0.14 -0.0
2,527,098 - Rru_A2176 0.14 +0.3
2,527,098 - Rru_A2176 0.14 -0.2
2,527,098 - Rru_A2176 0.14 -0.0
2,527,098 - Rru_A2176 0.14 +1.1
2,527,325 + Rru_A2176 0.37 +0.1
2,527,337 + Rru_A2176 0.39 +0.9
2,527,337 + Rru_A2176 0.39 +1.8
2,527,337 + Rru_A2176 0.39 +0.8
2,527,338 - Rru_A2176 0.39 +0.3
2,527,338 - Rru_A2176 0.39 -1.0
2,527,739 + Rru_A2176 0.80 -0.0
2,528,019 + +0.4
2,528,019 + +0.2
2,528,020 - +0.8
2,528,065 + Rru_A2177 0.11 +1.5
2,528,065 + Rru_A2177 0.11 -1.0
2,528,121 + Rru_A2177 0.16 +0.9
2,528,122 - Rru_A2177 0.17 -1.0
2,528,122 - Rru_A2177 0.17 +0.7
2,528,162 + Rru_A2177 0.20 -0.0
2,528,162 + Rru_A2177 0.20 -2.0
2,528,163 - Rru_A2177 0.20 +0.3
2,528,163 - Rru_A2177 0.20 -0.0
2,528,217 + Rru_A2177 0.25 -0.0
2,528,218 - Rru_A2177 0.25 +0.3
2,528,329 + Rru_A2177 0.36 -0.0
2,528,338 + Rru_A2177 0.36 -0.0
2,528,338 + Rru_A2177 0.36 +1.0
2,528,338 + Rru_A2177 0.36 +0.4
2,528,338 + Rru_A2177 0.36 -0.0
2,528,338 + Rru_A2177 0.36 -0.0
2,528,339 - Rru_A2177 0.36 -0.0
2,528,339 - Rru_A2177 0.36 -0.0
2,528,453 - Rru_A2177 0.47 +0.4
2,528,453 - Rru_A2177 0.47 +0.1
2,528,453 - Rru_A2177 0.47 -0.0
2,528,453 - Rru_A2177 0.47 +0.3
2,528,490 + Rru_A2177 0.50 -0.0
2,528,490 + Rru_A2177 0.50 -0.0
2,528,491 - Rru_A2177 0.50 +0.4
2,528,655 - Rru_A2177 0.65 +0.4
2,528,655 - Rru_A2177 0.65 -0.8
2,528,655 - Rru_A2177 0.65 +0.0
2,528,655 - Rru_A2177 0.65 -0.0
2,528,656 + Rru_A2177 0.65 -1.6
2,528,656 + Rru_A2177 0.65 +1.9
2,528,656 + Rru_A2177 0.65 +0.9
2,528,656 + Rru_A2177 0.65 -0.0
2,528,656 + Rru_A2177 0.65 +0.6
2,528,656 + Rru_A2177 0.65 -0.0
2,528,656 + Rru_A2177 0.65 +1.3
2,528,656 + Rru_A2177 0.65 -0.0
2,528,657 - Rru_A2177 0.66 +0.5
2,528,657 - Rru_A2177 0.66 +0.3
2,528,657 - Rru_A2177 0.66 +0.5
2,528,657 - Rru_A2177 0.66 -0.0
2,528,809 + Rru_A2177 0.79 +1.5
2,528,809 + Rru_A2177 0.79 +0.2
2,528,810 - Rru_A2177 0.80 -0.0
2,528,810 - Rru_A2177 0.80 +1.0

Or see this region's nucleotide sequence