Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2167
Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | acetate; Light intensity 9 uM |
---|---|---|---|---|---|
remove | |||||
2,515,312 | - | Rru_A2166 | 0.39 | -1.0 | |
2,515,312 | - | Rru_A2166 | 0.39 | -1.6 | |
2,515,312 | - | Rru_A2166 | 0.39 | +1.0 | |
2,515,341 | + | Rru_A2166 | 0.41 | -0.0 | |
2,515,342 | - | Rru_A2166 | 0.41 | +0.2 | |
2,515,342 | - | Rru_A2166 | 0.41 | -0.0 | |
2,515,342 | - | Rru_A2166 | 0.41 | -0.0 | |
2,515,342 | - | Rru_A2166 | 0.41 | -0.0 | |
2,515,342 | - | Rru_A2166 | 0.41 | -0.8 | |
2,515,690 | + | Rru_A2166 | 0.67 | -0.0 | |
2,515,691 | - | Rru_A2166 | 0.67 | -1.0 | |
2,515,691 | - | Rru_A2166 | 0.67 | -0.0 | |
2,515,821 | + | Rru_A2166 | 0.77 | -0.0 | |
2,516,153 | - | +1.0 | |||
2,516,155 | - | -0.0 | |||
2,516,155 | - | -0.0 | |||
2,516,155 | - | -1.0 | |||
2,516,379 | + | Rru_A2167 | 0.10 | -0.0 | |
2,516,537 | + | Rru_A2167 | 0.24 | -2.7 | |
2,516,679 | + | Rru_A2167 | 0.36 | -0.8 | |
2,516,802 | + | Rru_A2167 | 0.47 | -1.4 | |
2,516,802 | + | Rru_A2167 | 0.47 | -1.6 | |
2,516,817 | + | Rru_A2167 | 0.48 | -0.9 | |
2,517,048 | + | Rru_A2167 | 0.68 | -0.0 | |
2,517,104 | + | Rru_A2167 | 0.72 | -1.0 | |
2,518,197 | + | -0.0 |
Or see this region's nucleotide sequence