Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2096 and Rru_A2097 overlap by 1 nucleotides Rru_A2097 and Rru_A2098 are separated by 112 nucleotides
Rru_A2096: Rru_A2096 - Cell divisionFtsK/SpoIIIE (NCBI), at 2,425,448 to 2,427,628
_A2096
Rru_A2097: Rru_A2097 - hypothetical protein (NCBI), at 2,427,628 to 2,428,071
_A2097
Rru_A2098: Rru_A2098 - Protein of unknown function DUF490 (NCBI), at 2,428,184 to 2,432,686
_A2098
Position (kb)
2427
2428
2429 Strain fitness (log2 ratio)
-1
0
1 at 2426.658 kb on + strand, within Rru_A2096 at 2426.658 kb on + strand, within Rru_A2096 at 2426.659 kb on - strand, within Rru_A2096 at 2426.659 kb on - strand, within Rru_A2096 at 2426.992 kb on - strand, within Rru_A2096 at 2427.108 kb on - strand, within Rru_A2096 at 2427.108 kb on - strand, within Rru_A2096 at 2427.108 kb on - strand, within Rru_A2096 at 2427.387 kb on + strand, within Rru_A2096 at 2427.388 kb on - strand, within Rru_A2096 at 2427.388 kb on - strand, within Rru_A2096 at 2427.388 kb on - strand, within Rru_A2096 at 2427.642 kb on - strand at 2427.741 kb on - strand, within Rru_A2097 at 2427.741 kb on - strand, within Rru_A2097 at 2427.783 kb on - strand, within Rru_A2097 at 2427.866 kb on + strand, within Rru_A2097 at 2427.867 kb on - strand, within Rru_A2097 at 2427.879 kb on - strand, within Rru_A2097 at 2427.879 kb on - strand, within Rru_A2097 at 2427.879 kb on - strand, within Rru_A2097 at 2427.885 kb on + strand, within Rru_A2097 at 2427.886 kb on - strand, within Rru_A2097 at 2427.886 kb on - strand, within Rru_A2097 at 2427.887 kb on + strand, within Rru_A2097 at 2427.887 kb on + strand, within Rru_A2097 at 2427.887 kb on + strand, within Rru_A2097 at 2428.016 kb on + strand, within Rru_A2097 at 2428.105 kb on - strand at 2428.105 kb on - strand at 2428.182 kb on + strand at 2428.182 kb on + strand at 2428.188 kb on + strand at 2428.188 kb on + strand at 2428.325 kb on - strand at 2428.326 kb on + strand at 2428.326 kb on + strand at 2428.326 kb on + strand at 2428.326 kb on + strand at 2428.326 kb on + strand at 2428.327 kb on - strand at 2428.327 kb on - strand at 2428.344 kb on + strand at 2428.344 kb on + strand at 2428.344 kb on + strand at 2428.345 kb on - strand at 2428.639 kb on + strand, within Rru_A2098 at 2428.640 kb on - strand, within Rru_A2098 at 2428.848 kb on + strand, within Rru_A2098 at 2428.849 kb on - strand, within Rru_A2098
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 2,426,658 + Rru_A2096 0.55 +0.2 2,426,658 + Rru_A2096 0.55 -0.1 2,426,659 - Rru_A2096 0.56 -0.0 2,426,659 - Rru_A2096 0.56 -0.0 2,426,992 - Rru_A2096 0.71 +1.0 2,427,108 - Rru_A2096 0.76 +0.8 2,427,108 - Rru_A2096 0.76 -0.0 2,427,108 - Rru_A2096 0.76 -0.0 2,427,387 + Rru_A2096 0.89 -0.0 2,427,388 - Rru_A2096 0.89 +0.3 2,427,388 - Rru_A2096 0.89 -0.0 2,427,388 - Rru_A2096 0.89 -0.0 2,427,642 - -0.0 2,427,741 - Rru_A2097 0.25 -1.1 2,427,741 - Rru_A2097 0.25 -0.6 2,427,783 - Rru_A2097 0.35 -0.0 2,427,866 + Rru_A2097 0.54 -0.5 2,427,867 - Rru_A2097 0.54 +0.3 2,427,879 - Rru_A2097 0.57 -0.0 2,427,879 - Rru_A2097 0.57 -0.0 2,427,879 - Rru_A2097 0.57 +1.0 2,427,885 + Rru_A2097 0.58 -0.9 2,427,886 - Rru_A2097 0.58 +0.4 2,427,886 - Rru_A2097 0.58 +0.2 2,427,887 + Rru_A2097 0.58 -1.0 2,427,887 + Rru_A2097 0.58 -0.0 2,427,887 + Rru_A2097 0.58 -1.0 2,428,016 + Rru_A2097 0.87 +1.3 2,428,105 - +0.6 2,428,105 - -1.0 2,428,182 + -0.0 2,428,182 + -0.0 2,428,188 + -1.0 2,428,188 + -0.0 2,428,325 - -0.0 2,428,326 + -0.0 2,428,326 + -0.0 2,428,326 + -0.0 2,428,326 + +0.3 2,428,326 + -0.0 2,428,327 - +0.0 2,428,327 - -0.0 2,428,344 + -1.0 2,428,344 + -0.0 2,428,344 + -0.0 2,428,345 - -0.0 2,428,639 + Rru_A2098 0.10 -0.0 2,428,640 - Rru_A2098 0.10 -1.0 2,428,848 + Rru_A2098 0.15 -0.0 2,428,849 - Rru_A2098 0.15 -0.0
Or see this region's nucleotide sequence