Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2089 and Rru_A2090 overlap by 1 nucleotides Rru_A2090 and Rru_A2091 are separated by 256 nucleotides Rru_A2091 and Rru_A2092 are separated by 62 nucleotides Rru_A2092 and Rru_A2093 are separated by 254 nucleotides
Rru_A2089: Rru_A2089 - Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI), at 2,417,532 to 2,418,224
_A2089
Rru_A2090: Rru_A2090 - ABC transporter component (NCBI), at 2,418,224 to 2,418,967
_A2090
Rru_A2091: Rru_A2091 - hypothetical protein (NCBI), at 2,419,224 to 2,419,481
_A2091
Rru_A2092: Rru_A2092 - hypothetical protein (NCBI), at 2,419,544 to 2,419,960
_A2092
Rru_A2093: Rru_A2093 - Methyltransferase FkbM (NCBI), at 2,420,215 to 2,420,973
_A2093
Position (kb)
2419
2420 Strain fitness (log2 ratio)
-2
-1
0
1 at 2418.262 kb on + strand at 2418.263 kb on - strand at 2418.270 kb on - strand at 2418.409 kb on + strand, within Rru_A2090 at 2418.965 kb on + strand at 2419.294 kb on - strand, within Rru_A2091 at 2419.302 kb on + strand, within Rru_A2091 at 2419.303 kb on - strand, within Rru_A2091 at 2419.919 kb on + strand at 2419.919 kb on + strand at 2419.920 kb on - strand at 2419.920 kb on - strand at 2419.920 kb on - strand at 2419.927 kb on - strand at 2419.979 kb on + strand at 2419.981 kb on + strand at 2419.982 kb on - strand at 2420.025 kb on + strand at 2420.327 kb on - strand, within Rru_A2093 at 2420.375 kb on + strand, within Rru_A2093 at 2420.463 kb on + strand, within Rru_A2093
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 2,418,262 + -1.9 2,418,263 - +0.8 2,418,270 - +0.8 2,418,409 + Rru_A2090 0.25 -0.0 2,418,965 + +1.1 2,419,294 - Rru_A2091 0.27 +1.2 2,419,302 + Rru_A2091 0.30 -0.3 2,419,303 - Rru_A2091 0.31 -0.0 2,419,919 + -0.0 2,419,919 + -0.0 2,419,920 - +0.8 2,419,920 - +0.9 2,419,920 - -0.0 2,419,927 - +0.4 2,419,979 + -1.0 2,419,981 + +0.5 2,419,982 - -0.0 2,420,025 + +0.1 2,420,327 - Rru_A2093 0.15 +1.4 2,420,375 + Rru_A2093 0.21 -0.0 2,420,463 + Rru_A2093 0.33 -0.2
Or see this region's nucleotide sequence