Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2071 and Rru_A2072 are separated by 77 nucleotides Rru_A2072 and Rru_A2073 are separated by 123 nucleotides
Rru_A2071: Rru_A2071 - Methylmalonate-semialdehyde dehydrogenase (NCBI), at 2,395,812 to 2,397,317
_A2071
Rru_A2072: Rru_A2072 - Aspartyl-tRNA synthetase (NCBI), at 2,397,395 to 2,399,215
_A2072
Rru_A2073: Rru_A2073 - Ribonuclease D (NCBI), at 2,399,339 to 2,400,499
_A2073
Position (kb)
2397
2398
2399
2400 Strain fitness (log2 ratio)
-2
-1
0
1 at 2396.514 kb on + strand, within Rru_A2071 at 2396.514 kb on + strand, within Rru_A2071 at 2396.514 kb on + strand, within Rru_A2071 at 2396.514 kb on + strand, within Rru_A2071 at 2396.514 kb on + strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.520 kb on + strand, within Rru_A2071 at 2396.520 kb on + strand, within Rru_A2071 at 2396.520 kb on + strand, within Rru_A2071 at 2396.520 kb on + strand, within Rru_A2071 at 2396.520 kb on + strand, within Rru_A2071 at 2396.520 kb on + strand, within Rru_A2071 at 2396.521 kb on - strand, within Rru_A2071 at 2396.640 kb on + strand, within Rru_A2071 at 2396.896 kb on - strand, within Rru_A2071 at 2396.896 kb on - strand, within Rru_A2071 at 2396.910 kb on + strand, within Rru_A2071 at 2396.911 kb on - strand, within Rru_A2071 at 2396.911 kb on - strand, within Rru_A2071 at 2396.958 kb on + strand, within Rru_A2071 at 2397.009 kb on + strand, within Rru_A2071 at 2397.009 kb on + strand, within Rru_A2071 at 2397.009 kb on + strand, within Rru_A2071 at 2397.045 kb on + strand, within Rru_A2071 at 2397.046 kb on - strand, within Rru_A2071 at 2397.159 kb on + strand, within Rru_A2071 at 2397.159 kb on + strand, within Rru_A2071 at 2397.234 kb on + strand at 2397.234 kb on + strand at 2397.234 kb on + strand at 2397.235 kb on - strand at 2397.235 kb on - strand at 2397.397 kb on - strand at 2399.327 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 2,396,514 + Rru_A2071 0.47 +0.7 2,396,514 + Rru_A2071 0.47 -0.0 2,396,514 + Rru_A2071 0.47 -0.0 2,396,514 + Rru_A2071 0.47 +0.9 2,396,514 + Rru_A2071 0.47 -0.2 2,396,515 - Rru_A2071 0.47 +0.2 2,396,515 - Rru_A2071 0.47 -0.0 2,396,515 - Rru_A2071 0.47 -0.0 2,396,515 - Rru_A2071 0.47 -0.0 2,396,515 - Rru_A2071 0.47 -0.0 2,396,515 - Rru_A2071 0.47 +0.9 2,396,515 - Rru_A2071 0.47 -0.0 2,396,515 - Rru_A2071 0.47 +0.3 2,396,515 - Rru_A2071 0.47 -0.0 2,396,520 + Rru_A2071 0.47 -0.0 2,396,520 + Rru_A2071 0.47 +0.5 2,396,520 + Rru_A2071 0.47 -0.0 2,396,520 + Rru_A2071 0.47 +0.1 2,396,520 + Rru_A2071 0.47 -0.0 2,396,520 + Rru_A2071 0.47 +0.7 2,396,521 - Rru_A2071 0.47 -0.4 2,396,640 + Rru_A2071 0.55 -0.0 2,396,896 - Rru_A2071 0.72 +0.7 2,396,896 - Rru_A2071 0.72 -0.5 2,396,910 + Rru_A2071 0.73 -1.0 2,396,911 - Rru_A2071 0.73 -2.0 2,396,911 - Rru_A2071 0.73 +0.4 2,396,958 + Rru_A2071 0.76 +0.5 2,397,009 + Rru_A2071 0.79 -0.0 2,397,009 + Rru_A2071 0.79 -0.0 2,397,009 + Rru_A2071 0.79 +0.0 2,397,045 + Rru_A2071 0.82 -0.0 2,397,046 - Rru_A2071 0.82 +0.4 2,397,159 + Rru_A2071 0.89 -0.0 2,397,159 + Rru_A2071 0.89 +1.4 2,397,234 + -0.0 2,397,234 + +1.2 2,397,234 + +0.8 2,397,235 - -0.0 2,397,235 - -0.0 2,397,397 - -1.6 2,399,327 + -0.0
Or see this region's nucleotide sequence