Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2000

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
2,308,997	-				-0.0
2,309,003	+				-0.8
2,309,004	-				-0.0
2,309,100	-		Rru_A1999	0.10	+1.5
2,309,121	+		Rru_A1999	0.17	-0.0
2,309,184	+		Rru_A1999	0.37	-0.5
2,309,367	+				-0.0
2,309,368	-				+0.6
2,309,422	+				-0.9
2,309,721	+				-0.0
2,309,721	+				-1.6
2,309,721	+				-0.0
2,309,721	+				-0.4
2,309,722	-				-0.0
2,309,722	-				-0.0
2,309,723	+				-1.0
2,309,723	+				-1.0
2,309,723	+				-0.0
2,309,724	-				+0.1
2,309,761	+				-1.5
2,309,761	+				-0.7
2,309,762	-				-0.0
2,309,799	+				-0.5
2,309,801	+				-0.7
2,309,801	+				-1.4
2,310,011	+		Rru_A2000	0.17	+1.0
2,310,012	-		Rru_A2000	0.17	+0.7
2,310,013	+		Rru_A2000	0.17	-0.0
2,310,218	+		Rru_A2000	0.61	-0.0
2,310,291	+		Rru_A2000	0.76	+1.7
2,310,291	+		Rru_A2000	0.76	+0.5
2,310,292	-		Rru_A2000	0.76	-1.0
2,310,292	-		Rru_A2000	0.76	+1.7
2,310,292	-		Rru_A2000	0.76	-0.0
2,310,450	+				-1.6
2,310,589	+				-0.0
2,310,590	-				-0.0
2,310,637	+				-0.0
2,310,639	+				-0.2
2,310,639	+				-0.0
2,310,640	-				-0.0
2,310,640	-				+1.0
2,310,640	-				-1.0
2,310,640	-				-0.0
2,310,640	-				-0.0
2,310,792	+		Rru_A2001	0.23	-0.0
2,310,792	+		Rru_A2001	0.23	-1.0
2,310,792	+		Rru_A2001	0.23	-0.0
2,310,792	+		Rru_A2001	0.23	-0.0
2,310,793	-		Rru_A2001	0.23	-0.0
2,310,864	+		Rru_A2001	0.29	-0.0
2,310,916	-		Rru_A2001	0.34	+1.0
2,310,916	-		Rru_A2001	0.34	+0.9
2,310,919	+		Rru_A2001	0.35	-0.0
2,310,919	+		Rru_A2001	0.35	-0.0
2,310,919	+		Rru_A2001	0.35	-0.0
2,310,919	+		Rru_A2001	0.35	-0.0
2,310,920	-		Rru_A2001	0.35	-0.0
2,310,920	-		Rru_A2001	0.35	-0.3
2,310,920	-		Rru_A2001	0.35	-0.0
2,310,920	-		Rru_A2001	0.35	+0.5
2,310,921	+		Rru_A2001	0.35	+0.2
2,310,921	+		Rru_A2001	0.35	-0.0
2,310,921	+		Rru_A2001	0.35	-0.0
2,310,921	+		Rru_A2001	0.35	-0.0
2,310,921	+		Rru_A2001	0.35	-0.0
2,310,922	-		Rru_A2001	0.35	-0.0
2,310,922	-		Rru_A2001	0.35	-0.0
2,311,014	+		Rru_A2001	0.44	-1.0
2,311,015	-		Rru_A2001	0.44	-0.0
2,311,017	+		Rru_A2001	0.44	-0.0
2,311,017	+		Rru_A2001	0.44	-0.0
2,311,018	-		Rru_A2001	0.44	-0.0
2,311,165	+		Rru_A2001	0.58	+0.2
2,311,166	-		Rru_A2001	0.58	+0.8
2,311,186	-		Rru_A2001	0.60	-0.9
2,311,200	+		Rru_A2001	0.61	-0.2
2,311,200	+		Rru_A2001	0.61	-1.0
2,311,200	+		Rru_A2001	0.61	-0.0
2,311,200	+		Rru_A2001	0.61	-0.0
2,311,201	-		Rru_A2001	0.61	-0.0
2,311,201	-		Rru_A2001	0.61	+0.5
2,311,201	-		Rru_A2001	0.61	-0.0
2,311,201	-		Rru_A2001	0.61	-0.0
2,311,201	-		Rru_A2001	0.61	-0.0
2,311,201	-		Rru_A2001	0.61	-0.0
2,311,215	+		Rru_A2001	0.63	-0.0
2,311,216	-		Rru_A2001	0.63	-0.0
2,311,294	-		Rru_A2001	0.70	-0.0
2,311,361	-		Rru_A2001	0.77	-0.0
2,311,361	-		Rru_A2001	0.77	+0.6