Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1979

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
2,289,307	+		Rru_A1978	0.69	-0.0
2,289,307	+		Rru_A1978	0.69	+0.4
2,289,308	-		Rru_A1978	0.69	+0.7
2,289,308	-		Rru_A1978	0.69	+0.5
2,289,308	-		Rru_A1978	0.69	-0.0
2,289,308	-		Rru_A1978	0.69	-0.6
2,289,308	-		Rru_A1978	0.69	-0.0
2,289,437	+		Rru_A1978	0.76	+0.8
2,289,437	+		Rru_A1978	0.76	-1.0
2,289,437	+		Rru_A1978	0.76	-0.0
2,289,437	+		Rru_A1978	0.76	+0.4
2,289,437	+		Rru_A1978	0.76	-0.0
2,289,437	+		Rru_A1978	0.76	-0.0
2,289,438	-		Rru_A1978	0.76	+0.9
2,289,438	-		Rru_A1978	0.76	+0.2
2,289,438	-		Rru_A1978	0.76	-0.0
2,289,438	-		Rru_A1978	0.76	-1.0
2,289,494	+		Rru_A1978	0.79	-0.0
2,289,494	+		Rru_A1978	0.79	-0.5
2,289,725	+				-0.0
2,289,726	-				+0.6
2,289,726	-				-1.0
2,289,771	-				-0.0
2,289,882	+				+0.0
2,289,882	+				-0.0
2,289,882	+				+0.6
2,289,883	-				-0.0
2,289,883	-				+0.4
2,289,883	-				-0.0
2,289,883	-				-0.0
2,289,891	+				-0.0
2,289,892	-				-0.0
2,289,892	-				-0.0
2,289,892	-				-0.0
2,289,892	-				+1.5
2,289,913	+				-0.5
2,290,268	-				+1.3
2,290,268	-				+1.6
2,290,276	+				+0.0
2,290,277	-				-0.0
2,290,462	+		Rru_A1979	0.20	-0.0
2,290,462	+		Rru_A1979	0.20	+0.6
2,290,463	-		Rru_A1979	0.20	+0.6
2,290,576	+		Rru_A1979	0.29	-0.0
2,290,625	-		Rru_A1979	0.32	-0.0
2,290,625	-		Rru_A1979	0.32	-0.0
2,290,625	-		Rru_A1979	0.32	-0.0
2,290,630	+		Rru_A1979	0.33	-0.3
2,290,631	-		Rru_A1979	0.33	+0.4
2,290,712	+		Rru_A1979	0.39	-0.0
2,290,712	+		Rru_A1979	0.39	+0.6
2,290,714	+		Rru_A1979	0.39	+1.7
2,290,714	+		Rru_A1979	0.39	+1.0
2,290,714	+		Rru_A1979	0.39	+1.0
2,290,714	+		Rru_A1979	0.39	+0.4
2,290,715	-		Rru_A1979	0.39	+0.2
2,290,715	-		Rru_A1979	0.39	-1.0
2,290,800	+		Rru_A1979	0.45	+0.3
2,290,800	+		Rru_A1979	0.45	-0.0
2,290,800	+		Rru_A1979	0.45	-0.0
2,290,801	-		Rru_A1979	0.45	-0.0
2,290,801	-		Rru_A1979	0.45	-0.0
2,290,867	+		Rru_A1979	0.50	+1.1
2,290,867	+		Rru_A1979	0.50	+0.9
2,290,867	+		Rru_A1979	0.50	+0.6
2,290,867	+		Rru_A1979	0.50	+0.9
2,290,868	-		Rru_A1979	0.50	-0.0
2,290,868	-		Rru_A1979	0.50	+0.4
2,290,868	-		Rru_A1979	0.50	+0.8
2,290,868	-		Rru_A1979	0.50	+0.4
2,291,012	-		Rru_A1979	0.61	-0.0
2,291,012	-		Rru_A1979	0.61	-0.0
2,291,012	-		Rru_A1979	0.61	-1.0
2,291,012	-		Rru_A1979	0.61	-0.5
2,291,175	-		Rru_A1979	0.73	-0.4
2,291,176	+		Rru_A1979	0.73	-0.0
2,291,176	+		Rru_A1979	0.73	-0.0
2,291,176	+		Rru_A1979	0.73	+1.1
2,291,176	+		Rru_A1979	0.73	-0.0
2,291,176	+		Rru_A1979	0.73	+1.3
2,291,176	+		Rru_A1979	0.73	-0.0
2,291,177	-		Rru_A1979	0.73	-0.4
2,291,177	-		Rru_A1979	0.73	+0.6
2,291,177	-		Rru_A1979	0.73	+0.1
2,291,177	-		Rru_A1979	0.73	-0.1
2,291,199	-		Rru_A1979	0.75	-0.6
2,291,207	+		Rru_A1979	0.75	-0.6
2,291,207	+		Rru_A1979	0.75	+0.2
2,291,208	-		Rru_A1979	0.75	-0.0
2,291,208	-		Rru_A1979	0.75	-0.0
2,291,236	+		Rru_A1979	0.77	-1.0
2,291,237	-		Rru_A1979	0.77	+0.2
2,291,237	-		Rru_A1979	0.77	+0.6
2,291,245	+		Rru_A1979	0.78	-0.6
2,291,245	+		Rru_A1979	0.78	+0.9
2,291,245	+		Rru_A1979	0.78	+1.1
2,291,245	+		Rru_A1979	0.78	+0.6
2,291,246	-		Rru_A1979	0.78	+0.1
2,291,246	-		Rru_A1979	0.78	-0.0
2,291,246	-		Rru_A1979	0.78	-0.5
2,291,246	-		Rru_A1979	0.78	-0.0
2,291,249	+		Rru_A1979	0.78	-0.0
2,291,250	-		Rru_A1979	0.78	-0.0
2,291,250	-		Rru_A1979	0.78	-0.0
2,291,250	-		Rru_A1979	0.78	-0.0
2,291,250	-		Rru_A1979	0.78	+0.4
2,291,261	+		Rru_A1979	0.79	+0.4
2,291,321	-		Rru_A1979	0.84	-0.0
2,291,321	-		Rru_A1979	0.84	-0.0
2,291,488	+				-0.2
2,291,489	-				-0.0
2,291,489	-				+1.4
2,291,524	+				+0.3
2,291,525	-				+0.3
2,291,525	-				-0.0
2,291,525	-				-0.0
2,291,525	-				+0.4
2,291,525	-				-0.0
2,291,525	-				+0.9
2,291,531	+				-0.0
2,291,549	+				-1.6
2,291,587	+				+0.6
2,291,702	+				-1.0
2,291,702	+				+0.7