Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1978

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
2,287,020	-		Rru_A1976	0.75	-0.0
2,287,320	+				-0.0
2,287,320	+				-0.0
2,287,320	+				+0.8
2,287,320	+				-0.0
2,287,320	+				-0.0
2,287,320	+				+0.7
2,287,320	+				-0.0
2,287,320	+				-0.0
2,287,321	-				-0.0
2,287,321	-				+0.2
2,287,321	-				+0.0
2,287,321	-				+0.3
2,287,321	-				-0.0
2,287,321	-				-0.0
2,287,321	-				+1.0
2,287,322	+				+0.2
2,287,323	-				+0.7
2,287,338	+				-0.0
2,287,338	+				+0.6
2,287,338	+				+1.1
2,287,339	-				+0.9
2,287,339	-				+0.4
2,287,339	-				+0.5
2,287,339	-				-0.6
2,287,339	-				+0.7
2,288,001	+				+1.0
2,288,001	+				-0.0
2,288,002	-				+0.8
2,288,002	-				-0.0
2,288,002	-				-0.0
2,288,232	+		Rru_A1978	0.11	-0.8
2,288,464	-		Rru_A1978	0.24	-0.0
2,288,552	+		Rru_A1978	0.29	-0.1
2,288,552	+		Rru_A1978	0.29	-0.0
2,288,552	+		Rru_A1978	0.29	+1.0
2,288,552	+		Rru_A1978	0.29	-0.0
2,288,552	+		Rru_A1978	0.29	+0.8
2,288,553	-		Rru_A1978	0.29	-1.0
2,288,553	-		Rru_A1978	0.29	+0.5
2,288,738	+		Rru_A1978	0.39	+0.1
2,288,739	-		Rru_A1978	0.39	-0.0
2,288,739	-		Rru_A1978	0.39	+1.5
2,288,739	-		Rru_A1978	0.39	-0.0
2,288,739	-		Rru_A1978	0.39	+0.1
2,288,739	-		Rru_A1978	0.39	+0.8
2,288,792	+		Rru_A1978	0.41	+0.3
2,288,792	+		Rru_A1978	0.41	-0.0
2,288,792	+		Rru_A1978	0.41	-0.0
2,288,792	+		Rru_A1978	0.41	-0.1
2,288,793	-		Rru_A1978	0.41	-2.0
2,288,793	-		Rru_A1978	0.41	+0.5
2,288,793	-		Rru_A1978	0.41	-0.0
2,288,793	-		Rru_A1978	0.41	-0.4
2,288,933	+		Rru_A1978	0.49	-0.0
2,289,074	+		Rru_A1978	0.57	-0.6
2,289,307	+		Rru_A1978	0.69	-0.0
2,289,307	+		Rru_A1978	0.69	+0.4
2,289,308	-		Rru_A1978	0.69	+0.7
2,289,308	-		Rru_A1978	0.69	+0.5
2,289,308	-		Rru_A1978	0.69	-0.0
2,289,308	-		Rru_A1978	0.69	-0.6
2,289,308	-		Rru_A1978	0.69	-0.0
2,289,437	+		Rru_A1978	0.76	+0.8
2,289,437	+		Rru_A1978	0.76	-1.0
2,289,437	+		Rru_A1978	0.76	-0.0
2,289,437	+		Rru_A1978	0.76	+0.4
2,289,437	+		Rru_A1978	0.76	-0.0
2,289,437	+		Rru_A1978	0.76	-0.0
2,289,438	-		Rru_A1978	0.76	+0.9
2,289,438	-		Rru_A1978	0.76	+0.2
2,289,438	-		Rru_A1978	0.76	-0.0
2,289,438	-		Rru_A1978	0.76	-1.0
2,289,494	+		Rru_A1978	0.79	-0.0
2,289,494	+		Rru_A1978	0.79	-0.5
2,289,725	+				-0.0
2,289,726	-				+0.6
2,289,726	-				-1.0
2,289,771	-				-0.0
2,289,882	+				+0.0
2,289,882	+				-0.0
2,289,882	+				+0.6
2,289,883	-				-0.0
2,289,883	-				+0.4
2,289,883	-				-0.0
2,289,883	-				-0.0
2,289,891	+				-0.0
2,289,892	-				-0.0
2,289,892	-				-0.0
2,289,892	-				-0.0
2,289,892	-				+1.5
2,289,913	+				-0.5
2,290,268	-				+1.3
2,290,268	-				+1.6
2,290,276	+				+0.0
2,290,277	-				-0.0
2,290,462	+		Rru_A1979	0.20	-0.0
2,290,462	+		Rru_A1979	0.20	+0.6
2,290,463	-		Rru_A1979	0.20	+0.6
2,290,576	+		Rru_A1979	0.29	-0.0
2,290,625	-		Rru_A1979	0.32	-0.0
2,290,625	-		Rru_A1979	0.32	-0.0
2,290,625	-		Rru_A1979	0.32	-0.0
2,290,630	+		Rru_A1979	0.33	-0.3
2,290,631	-		Rru_A1979	0.33	+0.4
2,290,712	+		Rru_A1979	0.39	-0.0
2,290,712	+		Rru_A1979	0.39	+0.6
2,290,714	+		Rru_A1979	0.39	+1.7
2,290,714	+		Rru_A1979	0.39	+1.0
2,290,714	+		Rru_A1979	0.39	+1.0
2,290,714	+		Rru_A1979	0.39	+0.4
2,290,715	-		Rru_A1979	0.39	+0.2
2,290,715	-		Rru_A1979	0.39	-1.0
2,290,800	+		Rru_A1979	0.45	+0.3
2,290,800	+		Rru_A1979	0.45	-0.0
2,290,800	+		Rru_A1979	0.45	-0.0
2,290,801	-		Rru_A1979	0.45	-0.0
2,290,801	-		Rru_A1979	0.45	-0.0
2,290,867	+		Rru_A1979	0.50	+1.1
2,290,867	+		Rru_A1979	0.50	+0.9
2,290,867	+		Rru_A1979	0.50	+0.6
2,290,867	+		Rru_A1979	0.50	+0.9
2,290,868	-		Rru_A1979	0.50	-0.0
2,290,868	-		Rru_A1979	0.50	+0.4
2,290,868	-		Rru_A1979	0.50	+0.8
2,290,868	-		Rru_A1979	0.50	+0.4