Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1960

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
2,267,362	-		Rru_A1958	0.85	-1.0
2,267,378	+		Rru_A1958	0.87	-0.0
2,267,378	+		Rru_A1958	0.87	-0.0
2,267,379	-		Rru_A1958	0.87	-0.0
2,267,379	-		Rru_A1958	0.87	+0.8
2,267,379	-		Rru_A1958	0.87	+0.7
2,267,609	-		Rru_A1959	0.10	+0.8
2,267,888	+		Rru_A1959	0.50	+0.1
2,267,989	+		Rru_A1959	0.64	-0.0
2,267,989	+		Rru_A1959	0.64	+1.0
2,267,989	+		Rru_A1959	0.64	+1.4
2,267,989	+		Rru_A1959	0.64	+0.6
2,267,989	+		Rru_A1959	0.64	-0.0
2,267,989	+		Rru_A1959	0.64	+0.4
2,267,990	-		Rru_A1959	0.64	+0.1
2,267,990	-		Rru_A1959	0.64	-0.0
2,268,206	+				+0.5
2,268,206	+				-0.0
2,268,207	-				+1.0
2,268,241	+				+1.6
2,268,241	+				+0.2
2,268,242	-				+1.1
2,268,242	-				-0.0
2,268,306	+				+0.3
2,268,307	-				-0.0
2,268,367	+				+1.2
2,268,367	+				-0.0
2,268,367	+				+0.9
2,268,368	-				+0.7
2,268,368	-				-2.0
2,268,368	-				-0.0
2,268,368	-				-0.0
2,268,368	-				-0.0
2,268,368	-				-0.0
2,268,400	+		Rru_A1960	0.13	+0.5
2,268,400	+		Rru_A1960	0.13	+0.1
2,268,400	+		Rru_A1960	0.13	+1.1
2,268,400	+		Rru_A1960	0.13	-0.3
2,268,400	+		Rru_A1960	0.13	-0.4
2,268,401	-		Rru_A1960	0.13	+0.2
2,268,401	-		Rru_A1960	0.13	-0.0
2,268,401	-		Rru_A1960	0.13	+0.1
2,268,401	-		Rru_A1960	0.13	+0.8
2,268,484	+		Rru_A1960	0.25	-1.0
2,268,608	+		Rru_A1960	0.44	+0.5
2,268,609	-		Rru_A1960	0.44	+1.7
2,268,766	+		Rru_A1960	0.67	+0.1
2,268,766	+		Rru_A1960	0.67	+0.1
2,268,766	+		Rru_A1960	0.67	-0.3
2,268,766	+		Rru_A1960	0.67	+1.3
2,268,766	+		Rru_A1960	0.67	-0.4
2,268,766	+		Rru_A1960	0.67	+0.3
2,268,767	-		Rru_A1960	0.68	-0.0
2,268,767	-		Rru_A1960	0.68	-0.0
2,268,767	-		Rru_A1960	0.68	-0.0
2,268,767	-		Rru_A1960	0.68	-0.0
2,268,767	-		Rru_A1960	0.68	+0.6
2,268,767	-		Rru_A1960	0.68	+0.4
2,268,824	-		Rru_A1960	0.76	-0.5
2,268,824	-		Rru_A1960	0.76	-0.4
2,268,835	+		Rru_A1960	0.78	+0.3
2,268,836	-		Rru_A1960	0.78	+0.1
2,268,974	+				+0.2
2,268,975	-				-1.1
2,269,101	+				-0.4
2,269,253	-		Rru_A1961	0.28	-0.1
2,269,258	+		Rru_A1961	0.29	-0.3
2,269,258	+		Rru_A1961	0.29	+0.5
2,269,258	+		Rru_A1961	0.29	-0.9
2,269,258	+		Rru_A1961	0.29	-0.7
2,269,259	-		Rru_A1961	0.29	-0.0
2,269,259	-		Rru_A1961	0.29	-0.0
2,269,267	-		Rru_A1961	0.30	+0.3
2,269,377	+		Rru_A1961	0.47	-0.1
2,269,457	-		Rru_A1961	0.60	+1.2
2,269,648	+		Rru_A1961	0.89	-2.4
2,269,681	+				-0.0
2,269,682	-				+0.1
2,269,756	-				+0.2
2,269,756	-				+0.3
2,269,756	-				+0.8
2,269,756	-				+0.6
2,269,757	+				+1.0
2,269,764	+				-0.0
2,269,765	-				-0.0
2,269,921	-		Rru_A1962	0.49	-0.2
2,269,921	-		Rru_A1962	0.49	-0.0
2,269,921	-		Rru_A1962	0.49	-0.0
2,269,939	-		Rru_A1962	0.55	+0.3
2,269,939	-		Rru_A1962	0.55	+1.1