Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1909

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
2,212,858	+		Rru_A1908	0.59	-0.1
2,212,859	-		Rru_A1908	0.59	+0.5
2,212,859	-		Rru_A1908	0.59	+0.7
2,212,914	+		Rru_A1908	0.63	-0.1
2,212,914	+		Rru_A1908	0.63	-0.1
2,212,915	-		Rru_A1908	0.63	+1.9
2,212,915	-		Rru_A1908	0.63	-0.1
2,212,915	-		Rru_A1908	0.63	-0.2
2,212,915	-		Rru_A1908	0.63	-0.1
2,212,980	+		Rru_A1908	0.67	-0.1
2,213,003	-		Rru_A1908	0.69	-0.1
2,213,103	-		Rru_A1908	0.75	-0.1
2,213,172	-		Rru_A1908	0.79	-1.1
2,213,202	+		Rru_A1908	0.81	-0.1
2,213,383	+				-0.1
2,213,383	+				+0.6
2,213,383	+				-0.1
2,213,383	+				+1.5
2,213,383	+				-0.1
2,213,383	+				-0.1
2,213,383	+				+0.2
2,213,383	+				+0.2
2,213,383	+				+1.0
2,213,384	-				+1.0
2,213,384	-				+0.5
2,213,384	-				+0.6
2,213,384	-				-0.1
2,213,384	-				-0.1
2,213,384	-				-0.1
2,213,393	+				-0.1
2,213,393	+				+0.3
2,213,394	-				-0.1
2,213,405	+				-0.1
2,213,406	-				-1.6
2,213,406	-				-0.5
2,213,406	-				+1.7
2,213,413	+				-0.1
2,213,413	+				-0.1
2,213,465	+				+0.3
2,213,475	-				-0.1
2,213,475	-				-1.5
2,213,491	+				+0.2
2,213,631	+				-0.5
2,213,631	+				-0.1
2,213,631	+				-0.5
2,213,632	-				-0.1
2,213,632	-				-1.1
2,213,821	+		Rru_A1909	0.20	-0.9
2,213,821	+		Rru_A1909	0.20	-0.4
2,213,821	+		Rru_A1909	0.20	-0.3
2,213,822	-		Rru_A1909	0.20	-0.1
2,213,822	-		Rru_A1909	0.20	-0.1
2,213,822	-		Rru_A1909	0.20	-0.9
2,213,953	+		Rru_A1909	0.34	-0.1
2,213,953	+		Rru_A1909	0.34	-0.5
2,213,953	+		Rru_A1909	0.34	-0.6
2,213,953	+		Rru_A1909	0.34	-0.1
2,213,998	+		Rru_A1909	0.39	-0.1
2,214,002	+		Rru_A1909	0.39	-0.6
2,214,003	-		Rru_A1909	0.39	-1.1
2,214,006	+		Rru_A1909	0.40	-0.1
2,214,007	-		Rru_A1909	0.40	+0.4
2,214,013	-		Rru_A1909	0.41	-0.1
2,214,013	-		Rru_A1909	0.41	-0.1
2,214,013	-		Rru_A1909	0.41	-0.1
2,214,026	-		Rru_A1909	0.42	-0.1
2,214,085	-		Rru_A1909	0.48	-0.4
2,214,436	+		Rru_A1909	0.86	-2.1
2,214,437	-		Rru_A1909	0.86	-0.1
2,214,437	-		Rru_A1909	0.86	-0.1
2,214,437	-		Rru_A1909	0.86	-0.2
2,214,437	-		Rru_A1909	0.86	-1.1
2,214,437	-		Rru_A1909	0.86	-1.6
2,214,437	-		Rru_A1909	0.86	-1.3
2,214,634	+				+0.6
2,214,634	+				+0.3
2,214,634	+				-0.1
2,214,634	+				-0.1
2,214,635	-				-0.1
2,214,635	-				+0.3
2,214,635	-				+2.3
2,214,635	-				+2.8
2,214,673	+				-0.1
2,214,674	-				+0.4
2,214,674	-				-0.1
2,214,693	+				+0.5
2,214,747	+				+0.6
2,214,972	+		Rru_A1910	0.14	+2.2
2,214,972	+		Rru_A1910	0.14	-0.1
2,214,972	+		Rru_A1910	0.14	+0.1
2,214,972	+		Rru_A1910	0.14	+0.2
2,214,972	+		Rru_A1910	0.14	-0.1
2,214,972	+		Rru_A1910	0.14	-0.6
2,214,972	+		Rru_A1910	0.14	+0.7
2,214,972	+		Rru_A1910	0.14	-0.1
2,214,973	-		Rru_A1910	0.15	+0.9
2,214,973	-		Rru_A1910	0.15	-0.1
2,214,973	-		Rru_A1910	0.15	+0.4
2,214,973	-		Rru_A1910	0.15	-0.1
2,214,973	-		Rru_A1910	0.15	-0.1
2,214,973	-		Rru_A1910	0.15	-0.1
2,214,973	-		Rru_A1910	0.15	-1.1
2,214,973	-		Rru_A1910	0.15	+0.6
2,214,973	-		Rru_A1910	0.15	+1.4
2,214,973	-		Rru_A1910	0.15	+1.2
2,214,974	+		Rru_A1910	0.15	-0.1
2,214,974	+		Rru_A1910	0.15	-0.1
2,214,974	+		Rru_A1910	0.15	-1.1
2,214,975	-		Rru_A1910	0.15	-0.1
2,214,975	-		Rru_A1910	0.15	+0.3
2,215,158	+		Rru_A1910	0.29	+0.7
2,215,159	-		Rru_A1910	0.29	-0.1
2,215,159	-		Rru_A1910	0.29	+0.5
2,215,159	-		Rru_A1910	0.29	-0.1
2,215,159	-		Rru_A1910	0.29	+0.1
2,215,159	-		Rru_A1910	0.29	+0.2
2,215,159	-		Rru_A1910	0.29	+0.5
2,215,159	-		Rru_A1910	0.29	+0.1
2,215,179	+		Rru_A1910	0.31	-0.6
2,215,179	+		Rru_A1910	0.31	-0.5
2,215,179	+		Rru_A1910	0.31	-0.1
2,215,179	+		Rru_A1910	0.31	-0.0
2,215,180	-		Rru_A1910	0.31	+0.9
2,215,180	-		Rru_A1910	0.31	+0.1
2,215,180	-		Rru_A1910	0.31	-0.1
2,215,222	-		Rru_A1910	0.34	-1.2
2,215,389	-		Rru_A1910	0.48	-0.1
2,215,560	+		Rru_A1910	0.61	-0.2
2,215,560	+		Rru_A1910	0.61	-0.1
2,215,561	-		Rru_A1910	0.61	+0.2