Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1842

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
2,140,385	+				+2.1
2,140,386	-				-0.1
2,140,386	-				+2.0
2,140,400	+				-0.1
2,140,431	+		Rru_A1841	0.15	+1.9
2,140,431	+		Rru_A1841	0.15	+1.2
2,140,432	-		Rru_A1841	0.15	-1.6
2,140,573	-		Rru_A1841	0.44	-0.1
2,140,975	+				-0.1
2,140,975	+				-0.1
2,140,976	-				-0.1
2,140,976	-				+0.1
2,140,976	-				+0.1
2,140,976	-				-0.1
2,141,002	-				-0.1
2,141,018	+				+0.6
2,141,018	+				-0.1
2,141,018	+				+0.1
2,141,018	+				+0.4
2,141,018	+				+0.8
2,141,019	-				+0.0
2,141,083	+				+0.0
2,141,301	+		Rru_A1842	0.26	-0.1
2,141,301	+		Rru_A1842	0.26	-0.1
2,141,302	-		Rru_A1842	0.26	-0.8
2,141,302	-		Rru_A1842	0.26	-0.1
2,141,302	-		Rru_A1842	0.26	-0.1
2,141,302	-		Rru_A1842	0.26	-1.1
2,141,325	+		Rru_A1842	0.29	-0.8
2,141,325	+		Rru_A1842	0.29	-0.1
2,141,325	+		Rru_A1842	0.29	+0.4
2,141,325	+		Rru_A1842	0.29	+1.4
2,141,326	-		Rru_A1842	0.29	-0.1
2,141,441	+		Rru_A1842	0.42	+0.9
2,141,441	+		Rru_A1842	0.42	+1.2
2,141,442	-		Rru_A1842	0.42	-0.5
2,141,442	-		Rru_A1842	0.42	-0.1
2,141,559	-		Rru_A1842	0.56	-0.1
2,141,559	-		Rru_A1842	0.56	-0.6
2,141,606	+		Rru_A1842	0.61	-0.1
2,141,607	-		Rru_A1842	0.62	-0.1
2,141,637	-		Rru_A1842	0.65	-1.1
2,141,637	-		Rru_A1842	0.65	-1.1
2,141,728	-		Rru_A1842	0.76	-0.1
2,141,728	-		Rru_A1842	0.76	+0.9
2,141,788	-		Rru_A1842	0.83	-1.3
2,141,788	-		Rru_A1842	0.83	+0.6
2,141,822	+		Rru_A1842	0.87	+0.4
2,141,823	-		Rru_A1842	0.87	-0.1
2,141,823	-		Rru_A1842	0.87	+0.3
2,141,823	-		Rru_A1842	0.87	+0.1
2,141,832	+		Rru_A1842	0.88	+0.1
2,141,832	+		Rru_A1842	0.88	-0.1
2,141,832	+		Rru_A1842	0.88	-0.1
2,141,934	+				+0.4
2,141,935	-				-0.4
2,142,066	+				+0.9
2,142,704	+		Rru_A1843	0.66	-0.1
2,142,705	-		Rru_A1843	0.66	-0.1
2,142,725	+		Rru_A1843	0.68	+0.0
2,142,741	+		Rru_A1843	0.70	-1.1
2,142,743	+		Rru_A1843	0.70	+0.7
2,142,743	+		Rru_A1843	0.70	-0.1
2,142,744	-		Rru_A1843	0.70	+1.2