Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1775 and Rru_A1776 are separated by 20 nucleotides Rru_A1776 and Rru_A1777 are separated by 8 nucleotides Rru_A1777 and Rru_A1778 overlap by 11 nucleotides
Rru_A1775: Rru_A1775 - chromosome segregation and condensation protein ScpA (NCBI), at 2,066,473 to 2,067,285
_A1775
Rru_A1776: Rru_A1776 - Peptidase M50 (NCBI), at 2,067,306 to 2,067,992
_A1776
Rru_A1777: Rru_A1777 - Beta-N-acetylhexosaminidase (NCBI), at 2,068,001 to 2,069,020
_A1777
Rru_A1778: Rru_A1778 - hypothetical protein (NCBI), at 2,069,010 to 2,070,080
_A1778
Position (kb)
2068
2069
2070 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2067.110 kb on + strand, within Rru_A1775 at 2067.110 kb on + strand, within Rru_A1775 at 2067.334 kb on + strand at 2067.335 kb on - strand at 2067.335 kb on - strand at 2067.681 kb on - strand, within Rru_A1776 at 2067.681 kb on - strand, within Rru_A1776 at 2067.681 kb on - strand, within Rru_A1776 at 2067.681 kb on - strand, within Rru_A1776 at 2067.726 kb on - strand, within Rru_A1776 at 2067.726 kb on - strand, within Rru_A1776 at 2067.726 kb on - strand, within Rru_A1776 at 2067.911 kb on - strand, within Rru_A1776 at 2067.911 kb on - strand, within Rru_A1776 at 2068.048 kb on - strand at 2068.048 kb on - strand at 2068.048 kb on - strand at 2068.351 kb on - strand, within Rru_A1777 at 2068.351 kb on - strand, within Rru_A1777 at 2068.351 kb on - strand, within Rru_A1777 at 2068.358 kb on - strand, within Rru_A1777 at 2068.495 kb on + strand, within Rru_A1777 at 2068.495 kb on + strand, within Rru_A1777 at 2068.495 kb on + strand, within Rru_A1777 at 2068.496 kb on - strand, within Rru_A1777 at 2068.496 kb on - strand, within Rru_A1777 at 2068.496 kb on - strand, within Rru_A1777 at 2068.496 kb on - strand, within Rru_A1777 at 2068.496 kb on - strand, within Rru_A1777 at 2068.585 kb on - strand, within Rru_A1777 at 2068.738 kb on - strand, within Rru_A1777 at 2068.967 kb on - strand at 2068.967 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 2,067,110 + Rru_A1775 0.78 -1.1 2,067,110 + Rru_A1775 0.78 -0.1 2,067,334 + -1.6 2,067,335 - -0.1 2,067,335 - -0.1 2,067,681 - Rru_A1776 0.55 -0.7 2,067,681 - Rru_A1776 0.55 -0.1 2,067,681 - Rru_A1776 0.55 -0.1 2,067,681 - Rru_A1776 0.55 -0.1 2,067,726 - Rru_A1776 0.61 -3.3 2,067,726 - Rru_A1776 0.61 -1.1 2,067,726 - Rru_A1776 0.61 -1.1 2,067,911 - Rru_A1776 0.88 -0.1 2,067,911 - Rru_A1776 0.88 -1.1 2,068,048 - -1.0 2,068,048 - -0.2 2,068,048 - -0.1 2,068,351 - Rru_A1777 0.34 -0.1 2,068,351 - Rru_A1777 0.34 -0.1 2,068,351 - Rru_A1777 0.34 -0.8 2,068,358 - Rru_A1777 0.35 -2.3 2,068,495 + Rru_A1777 0.48 -1.1 2,068,495 + Rru_A1777 0.48 -0.1 2,068,495 + Rru_A1777 0.48 -0.1 2,068,496 - Rru_A1777 0.49 -0.1 2,068,496 - Rru_A1777 0.49 -1.1 2,068,496 - Rru_A1777 0.49 -0.1 2,068,496 - Rru_A1777 0.49 -0.1 2,068,496 - Rru_A1777 0.49 -0.1 2,068,585 - Rru_A1777 0.57 -0.5 2,068,738 - Rru_A1777 0.72 -0.1 2,068,967 - -0.1 2,068,967 - +0.3
Or see this region's nucleotide sequence