Experiment: acetate; Light intensity 9 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1761 and Rru_A1762 are separated by 54 nucleotides Rru_A1762 and Rru_A1763 are separated by 35 nucleotides Rru_A1763 and Rru_A1764 are separated by 15 nucleotides
Rru_A1761: Rru_A1761 - GCN5-related N-acetyltransferase (NCBI), at 2,054,120 to 2,054,704
_A1761
Rru_A1762: Rru_A1762 - Protein of unknown function DUF598 (NCBI), at 2,054,759 to 2,055,133
_A1762
Rru_A1763: Rru_A1763 - SecF protein (NCBI), at 2,055,169 to 2,056,224
_A1763
Rru_A1764: Rru_A1764 - SecD export membrane protein (NCBI), at 2,056,240 to 2,057,706
_A1764
Position (kb)
2055
2056
2057 Strain fitness (log2 ratio)
-1
0
1
2 at 2054.208 kb on - strand, within Rru_A1761 at 2054.606 kb on + strand, within Rru_A1761 at 2054.607 kb on - strand, within Rru_A1761 at 2054.703 kb on - strand at 2054.703 kb on - strand at 2054.760 kb on + strand at 2054.761 kb on - strand at 2055.372 kb on - strand, within Rru_A1763 at 2055.372 kb on - strand, within Rru_A1763 at 2055.409 kb on - strand, within Rru_A1763 at 2055.409 kb on - strand, within Rru_A1763 at 2055.558 kb on + strand, within Rru_A1763 at 2055.614 kb on + strand, within Rru_A1763 at 2055.615 kb on - strand, within Rru_A1763 at 2055.734 kb on + strand, within Rru_A1763 at 2055.734 kb on + strand, within Rru_A1763 at 2055.734 kb on + strand, within Rru_A1763 at 2055.735 kb on - strand, within Rru_A1763 at 2055.735 kb on - strand, within Rru_A1763 at 2055.761 kb on + strand, within Rru_A1763 at 2055.761 kb on + strand, within Rru_A1763 at 2055.762 kb on - strand, within Rru_A1763 at 2055.955 kb on - strand, within Rru_A1763 at 2055.971 kb on + strand, within Rru_A1763 at 2055.971 kb on + strand, within Rru_A1763 at 2055.972 kb on - strand, within Rru_A1763 at 2055.972 kb on - strand, within Rru_A1763 at 2055.972 kb on - strand, within Rru_A1763 at 2056.241 kb on + strand at 2056.241 kb on + strand at 2056.241 kb on + strand at 2056.387 kb on + strand, within Rru_A1764 at 2056.387 kb on + strand, within Rru_A1764 at 2056.388 kb on - strand, within Rru_A1764 at 2056.388 kb on - strand, within Rru_A1764 at 2056.416 kb on + strand, within Rru_A1764 at 2056.416 kb on + strand, within Rru_A1764 at 2056.630 kb on - strand, within Rru_A1764 at 2056.670 kb on + strand, within Rru_A1764 at 2056.670 kb on + strand, within Rru_A1764 at 2056.671 kb on - strand, within Rru_A1764
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 9 uM remove 2,054,208 - Rru_A1761 0.15 -0.1 2,054,606 + Rru_A1761 0.83 +0.2 2,054,607 - Rru_A1761 0.83 +1.3 2,054,703 - +0.9 2,054,703 - +0.2 2,054,760 + +0.6 2,054,761 - -1.1 2,055,372 - Rru_A1763 0.19 +0.6 2,055,372 - Rru_A1763 0.19 -0.1 2,055,409 - Rru_A1763 0.23 +0.6 2,055,409 - Rru_A1763 0.23 -1.1 2,055,558 + Rru_A1763 0.37 -0.1 2,055,614 + Rru_A1763 0.42 +2.4 2,055,615 - Rru_A1763 0.42 -0.1 2,055,734 + Rru_A1763 0.54 -0.1 2,055,734 + Rru_A1763 0.54 -1.1 2,055,734 + Rru_A1763 0.54 -0.1 2,055,735 - Rru_A1763 0.54 +0.4 2,055,735 - Rru_A1763 0.54 -0.1 2,055,761 + Rru_A1763 0.56 +0.7 2,055,761 + Rru_A1763 0.56 +0.9 2,055,762 - Rru_A1763 0.56 -1.6 2,055,955 - Rru_A1763 0.74 -0.1 2,055,971 + Rru_A1763 0.76 -0.1 2,055,971 + Rru_A1763 0.76 -0.1 2,055,972 - Rru_A1763 0.76 -0.1 2,055,972 - Rru_A1763 0.76 +0.5 2,055,972 - Rru_A1763 0.76 +2.3 2,056,241 + -1.1 2,056,241 + -0.1 2,056,241 + +1.1 2,056,387 + Rru_A1764 0.10 -0.1 2,056,387 + Rru_A1764 0.10 +0.5 2,056,388 - Rru_A1764 0.10 +0.1 2,056,388 - Rru_A1764 0.10 +0.4 2,056,416 + Rru_A1764 0.12 +0.1 2,056,416 + Rru_A1764 0.12 +0.9 2,056,630 - Rru_A1764 0.27 -1.6 2,056,670 + Rru_A1764 0.29 -0.1 2,056,670 + Rru_A1764 0.29 -0.1 2,056,671 - Rru_A1764 0.29 -0.1
Or see this region's nucleotide sequence