Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1688

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,978,842	+		Rru_A1686	0.83	-0.1
1,978,842	+		Rru_A1686	0.83	-1.1
1,978,842	+		Rru_A1686	0.83	-0.1
1,978,854	+		Rru_A1686	0.88	-1.1
1,978,854	+		Rru_A1686	0.88	-0.1
1,978,855	-		Rru_A1686	0.88	+2.1
1,978,855	-		Rru_A1686	0.88	+0.3
1,978,872	-				+0.7
1,978,872	-				+0.9
1,978,875	+				+1.1
1,978,875	+				-0.1
1,978,875	+				+1.1
1,978,875	+				-1.5
1,978,875	+				-0.1
1,978,875	+				-0.1
1,978,875	+				-0.5
1,978,875	+				-1.1
1,978,876	-				-0.1
1,978,876	-				-2.1
1,978,876	-				+1.4
1,978,876	-				-2.1
1,978,876	-				-1.1
1,978,941	+				-1.1
1,978,941	+				-0.1
1,979,529	+		Rru_A1687	0.72	-1.1
1,979,530	-		Rru_A1687	0.72	-0.1
1,979,530	-		Rru_A1687	0.72	-1.1
1,979,648	+		Rru_A1687	0.87	+0.7
1,979,773	+				-0.4
1,979,788	-				+0.4
1,979,789	+				-0.1
1,979,789	+				-1.1
1,979,789	+				+1.3
1,979,798	+				+0.6
1,979,801	-				+0.4
1,979,971	+		Rru_A1688	0.22	-0.1
1,980,343	-		Rru_A1688	0.82	+0.6
1,980,343	-		Rru_A1688	0.82	+0.9
1,980,343	-		Rru_A1688	0.82	+0.9
1,980,465	+				+0.6
1,980,466	-				+1.0
1,980,666	-				+0.8
1,980,776	+		Rru_A1689	0.21	+0.5
1,980,776	+		Rru_A1689	0.21	+0.2
1,980,776	+		Rru_A1689	0.21	+0.6
1,980,776	+		Rru_A1689	0.21	+0.5
1,980,776	+		Rru_A1689	0.21	+1.5
1,980,776	+		Rru_A1689	0.21	-0.1
1,980,776	+		Rru_A1689	0.21	+0.9
1,980,777	-		Rru_A1689	0.21	+0.1
1,980,777	-		Rru_A1689	0.21	+0.8
1,980,777	-		Rru_A1689	0.21	+0.6
1,980,777	-		Rru_A1689	0.21	+1.3
1,980,777	-		Rru_A1689	0.21	-0.1
1,980,777	-		Rru_A1689	0.21	+1.0
1,980,777	-		Rru_A1689	0.21	+0.7
1,980,999	+		Rru_A1689	0.62	-0.1
1,981,031	+		Rru_A1689	0.68	+1.3
1,981,031	+		Rru_A1689	0.68	-0.2
1,981,031	+		Rru_A1689	0.68	+0.9
1,981,031	+		Rru_A1689	0.68	+0.0
1,981,032	-		Rru_A1689	0.69	+1.0
1,981,032	-		Rru_A1689	0.69	-0.1
1,981,196	+				-0.1
1,981,196	+				-0.1
1,981,196	+				-1.2
1,981,197	-				+0.8
1,981,197	-				+0.6
1,981,197	-				-0.0
1,981,208	+				-0.1
1,981,309	+				-0.1
1,981,410	+				+0.3
1,981,410	+				-0.1
1,981,411	-				+0.6