Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1622

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,914,233	+		Rru_A1621	0.86	+0.8
1,914,235	+		Rru_A1621	0.86	-0.4
1,914,235	+		Rru_A1621	0.86	-0.1
1,914,235	+		Rru_A1621	0.86	-0.1
1,914,235	+		Rru_A1621	0.86	+0.5
1,914,236	-		Rru_A1621	0.86	+0.8
1,914,673	+				-1.7
1,914,673	+				+0.2
1,914,674	-				-0.1
1,914,674	-				+1.4
1,914,727	+				+0.4
1,914,727	+				-0.1
1,914,727	+				-0.1
1,914,728	-				-0.1
1,914,728	-				-0.1
1,914,728	-				+1.0
1,915,170	+		Rru_A1622	0.23	+0.9
1,915,171	-		Rru_A1622	0.23	+1.1
1,915,198	+		Rru_A1622	0.26	+0.7
1,915,198	+		Rru_A1622	0.26	-0.1
1,915,198	+		Rru_A1622	0.26	+0.9
1,915,219	+		Rru_A1622	0.29	+0.1
1,915,219	+		Rru_A1622	0.29	+0.7
1,915,285	+		Rru_A1622	0.37	-0.1
1,915,285	+		Rru_A1622	0.37	-0.1
1,915,285	+		Rru_A1622	0.37	+0.9
1,915,369	+		Rru_A1622	0.48	+0.3
1,915,369	+		Rru_A1622	0.48	+1.3
1,915,369	+		Rru_A1622	0.48	+1.1
1,915,369	+		Rru_A1622	0.48	+0.1
1,915,369	+		Rru_A1622	0.48	-0.1
1,915,369	+		Rru_A1622	0.48	-0.1
1,915,369	+		Rru_A1622	0.48	+0.4
1,915,370	-		Rru_A1622	0.48	+0.9
1,915,370	-		Rru_A1622	0.48	-0.1
1,915,370	-		Rru_A1622	0.48	+0.5
1,915,370	-		Rru_A1622	0.48	-0.3
1,915,370	-		Rru_A1622	0.48	+0.3
1,915,370	-		Rru_A1622	0.48	+0.6
1,915,370	-		Rru_A1622	0.48	+0.3
1,915,370	-		Rru_A1622	0.48	+1.2
1,915,377	+		Rru_A1622	0.49	+0.9
1,915,377	+		Rru_A1622	0.49	+1.0
1,915,377	+		Rru_A1622	0.49	-1.1
1,915,378	-		Rru_A1622	0.49	-0.1
1,915,868	+				+1.1
1,915,869	-				+1.0
1,915,885	+				-0.1
1,915,904	+				+1.0
1,915,966	+				+0.9
1,915,966	+				+0.7
1,915,966	+				-2.1
1,915,966	+				-0.1
1,915,967	-				+0.7
1,915,967	-				+0.3
1,915,967	-				-0.1
1,915,967	-				+0.4
1,915,967	-				+0.4
1,915,971	-				-0.1
1,916,029	+				-0.1
1,916,030	-				-1.1
1,916,049	+				-1.1
1,916,056	-				+1.1
1,916,110	-				-0.2
1,916,242	-				-0.1
1,916,255	-				+1.2
1,916,255	-				+1.7
1,916,255	-				+1.2
1,916,382	+		Rru_A1623	0.21	-1.3
1,916,383	-		Rru_A1623	0.22	-0.1