Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1606

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,895,689	+		Rru_A1605	0.74	+0.6
1,895,689	+		Rru_A1605	0.74	+0.6
1,895,689	+		Rru_A1605	0.74	+3.2
1,895,690	-		Rru_A1605	0.74	-0.1
1,895,690	-		Rru_A1605	0.74	+0.7
1,895,690	-		Rru_A1605	0.74	-0.1
1,895,690	-		Rru_A1605	0.74	-1.0
1,895,690	-		Rru_A1605	0.74	-0.1
1,895,690	-		Rru_A1605	0.74	+0.2
1,895,690	-		Rru_A1605	0.74	-0.1
1,896,138	+		Rru_A1605	0.87	+1.5
1,896,139	-		Rru_A1605	0.87	-0.8
1,896,139	-		Rru_A1605	0.87	+0.4
1,896,238	+				-0.1
1,896,299	+				-0.1
1,896,299	+				+1.5
1,896,299	+				+1.3
1,896,299	+				+1.2
1,896,300	-				-0.8
1,896,425	+				+1.2
1,896,426	-				-0.5
1,896,448	+				+1.0
1,896,449	-				-1.1
1,896,449	-				-0.1
1,896,455	+				+2.1
1,896,460	+				+1.5
1,896,460	+				+2.4
1,896,460	+				+1.1
1,896,461	-				-0.3
1,896,461	-				-0.8
1,896,461	-				-0.7
1,896,599	+				+1.1
1,896,605	-				-1.1
1,896,846	-				-0.5
1,896,869	+				-1.0
1,896,870	-				-0.1
1,896,914	+		Rru_A1606	0.11	-0.7
1,897,172	+		Rru_A1606	0.23	+0.8
1,897,173	-		Rru_A1606	0.23	-0.1
1,897,173	-		Rru_A1606	0.23	+0.5
1,897,173	-		Rru_A1606	0.23	-1.7
1,897,271	+		Rru_A1606	0.27	-0.3
1,897,271	+		Rru_A1606	0.27	-0.1
1,897,271	+		Rru_A1606	0.27	-0.2
1,897,271	+		Rru_A1606	0.27	-0.2
1,897,272	-		Rru_A1606	0.27	+0.5
1,897,364	+		Rru_A1606	0.32	-0.1
1,897,365	-		Rru_A1606	0.32	-1.2
1,897,365	-		Rru_A1606	0.32	-0.6
1,897,388	+		Rru_A1606	0.33	-0.1
1,897,388	+		Rru_A1606	0.33	-0.1
1,897,409	+		Rru_A1606	0.34	-1.1
1,897,409	+		Rru_A1606	0.34	+0.1
1,897,410	-		Rru_A1606	0.34	-0.6
1,897,480	+		Rru_A1606	0.37	+0.8
1,897,481	-		Rru_A1606	0.37	-0.4
1,897,496	+		Rru_A1606	0.38	-0.3
1,897,496	+		Rru_A1606	0.38	-1.1
1,897,496	+		Rru_A1606	0.38	-0.1
1,897,497	-		Rru_A1606	0.38	-0.1
1,897,505	-		Rru_A1606	0.38	-0.1
1,897,565	+		Rru_A1606	0.41	-0.1
1,897,565	+		Rru_A1606	0.41	-1.1
1,897,565	+		Rru_A1606	0.41	-0.1
1,897,565	+		Rru_A1606	0.41	+0.8
1,897,565	+		Rru_A1606	0.41	-0.1
1,897,566	-		Rru_A1606	0.41	-0.1
1,897,566	-		Rru_A1606	0.41	-1.1
1,897,566	-		Rru_A1606	0.41	-0.4
1,897,566	-		Rru_A1606	0.41	-0.1
1,897,568	+		Rru_A1606	0.41	-0.1
1,897,599	-		Rru_A1606	0.42	+2.1
1,897,599	-		Rru_A1606	0.42	-0.5
1,898,072	+		Rru_A1606	0.64	-0.1
1,898,072	+		Rru_A1606	0.64	-0.1
1,898,072	+		Rru_A1606	0.64	-0.1
1,898,072	+		Rru_A1606	0.64	-1.3
1,898,300	+		Rru_A1606	0.74	-0.6
1,898,301	-		Rru_A1606	0.74	-0.5
1,898,388	+		Rru_A1606	0.78	-0.2
1,898,388	+		Rru_A1606	0.78	-0.1
1,898,577	-		Rru_A1606	0.87	-0.1
1,898,577	-		Rru_A1606	0.87	-1.7
1,898,614	+		Rru_A1606	0.89	-0.1
1,898,615	-		Rru_A1606	0.89	-1.3
1,898,615	-		Rru_A1606	0.89	+0.1
1,898,625	+		Rru_A1606	0.89	-0.1
1,898,759	+				-0.1
1,898,760	-				+0.5
1,898,760	-				-0.1
1,898,760	-				+0.3
1,898,760	-				-0.1
1,898,760	-				-0.3
1,898,859	+				-0.1
1,898,859	+				-0.1
1,898,859	+				-0.1
1,898,859	+				+0.5
1,898,860	-				-0.0
1,898,860	-				-0.6
1,898,860	-				-0.1
1,898,860	-				-1.7
1,898,860	-				-2.7
1,898,918	-				+0.1
1,898,918	-				+0.4
1,898,961	+				-0.7
1,898,961	+				-0.1
1,898,961	+				+0.0
1,898,962	-				-0.4
1,898,962	-				+0.3
1,898,962	-				-0.1
1,899,291	-		Rru_A1607	0.18	-0.1
1,899,291	-		Rru_A1607	0.18	+0.4
1,899,660	+		Rru_A1607	0.35	-1.2
1,899,660	+		Rru_A1607	0.35	-1.7
1,899,660	+		Rru_A1607	0.35	+1.5
1,899,660	+		Rru_A1607	0.35	-0.1
1,899,660	+		Rru_A1607	0.35	-1.1
1,899,661	-		Rru_A1607	0.35	+0.5
1,899,661	-		Rru_A1607	0.35	-0.1
1,899,661	-		Rru_A1607	0.35	-0.1
1,899,662	+		Rru_A1607	0.35	-0.3
1,899,662	+		Rru_A1607	0.35	-0.4
1,899,662	+		Rru_A1607	0.35	-0.1
1,899,662	+		Rru_A1607	0.35	-1.1
1,899,662	+		Rru_A1607	0.35	+0.1
1,899,662	+		Rru_A1607	0.35	-2.3
1,899,663	-		Rru_A1607	0.35	-1.7
1,899,663	-		Rru_A1607	0.35	-0.1