Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1605

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,892,278	+		Rru_A1604	0.54	-0.1
1,892,279	-		Rru_A1604	0.54	+0.1
1,892,279	-		Rru_A1604	0.54	+0.9
1,892,302	+		Rru_A1604	0.55	-0.7
1,892,302	+		Rru_A1604	0.55	-0.1
1,892,564	-		Rru_A1604	0.68	-0.1
1,892,564	-		Rru_A1604	0.68	-0.1
1,892,564	-		Rru_A1604	0.68	-0.1
1,892,564	-		Rru_A1604	0.68	-1.6
1,892,564	-		Rru_A1604	0.68	+0.4
1,892,569	+		Rru_A1604	0.68	-1.1
1,892,570	-		Rru_A1604	0.68	-0.1
1,892,570	-		Rru_A1604	0.68	+0.1
1,892,570	-		Rru_A1604	0.68	+0.1
1,892,570	-		Rru_A1604	0.68	-0.5
1,892,570	-		Rru_A1604	0.68	-1.1
1,892,608	+		Rru_A1604	0.70	-0.1
1,892,608	+		Rru_A1604	0.70	-0.1
1,892,608	+		Rru_A1604	0.70	-0.1
1,892,609	-		Rru_A1604	0.70	+0.4
1,892,609	-		Rru_A1604	0.70	-0.0
1,892,609	-		Rru_A1604	0.70	-0.1
1,892,611	-		Rru_A1604	0.70	-0.1
1,892,611	-		Rru_A1604	0.70	+0.3
1,892,611	-		Rru_A1604	0.70	+1.0
1,892,611	-		Rru_A1604	0.70	+0.5
1,892,611	-		Rru_A1604	0.70	+0.5
1,892,644	+		Rru_A1604	0.72	+0.3
1,892,761	+		Rru_A1604	0.78	-0.1
1,892,762	-		Rru_A1604	0.78	-0.1
1,892,762	-		Rru_A1604	0.78	-0.1
1,892,822	-		Rru_A1604	0.80	-0.4
1,892,822	-		Rru_A1604	0.80	-0.2
1,892,839	+		Rru_A1604	0.81	-0.5
1,892,839	+		Rru_A1604	0.81	-1.4
1,892,840	-		Rru_A1604	0.81	-0.3
1,892,840	-		Rru_A1604	0.81	-0.1
1,892,840	-		Rru_A1604	0.81	-0.3
1,892,840	-		Rru_A1604	0.81	+0.2
1,892,840	-		Rru_A1604	0.81	+0.2
1,892,987	-		Rru_A1604	0.88	-0.1
1,893,015	+		Rru_A1604	0.90	-0.1
1,893,016	-		Rru_A1604	0.90	-0.1
1,893,172	+				-2.8
1,893,173	-				-0.1
1,893,270	-				+0.9
1,893,373	+				-1.7
1,893,374	-				-0.2
1,893,418	+				-0.4
1,893,418	+				+0.2
1,893,418	+				-0.1
1,893,419	-				-0.7
1,893,460	+				-0.1
1,893,461	-				-0.1
1,893,481	+				+0.7
1,893,482	-				-0.1
1,893,637	+		Rru_A1605	0.12	+0.1
1,893,637	+		Rru_A1605	0.12	+0.0
1,893,637	+		Rru_A1605	0.12	+0.9
1,893,637	+		Rru_A1605	0.12	-0.1
1,893,637	+		Rru_A1605	0.12	+0.8
1,893,637	+		Rru_A1605	0.12	+0.6
1,893,638	-		Rru_A1605	0.12	-0.1
1,893,638	-		Rru_A1605	0.12	-0.1
1,893,638	-		Rru_A1605	0.12	-0.1
1,893,638	-		Rru_A1605	0.12	-0.1
1,893,638	-		Rru_A1605	0.12	-0.1
1,893,638	-		Rru_A1605	0.12	-0.7
1,893,638	-		Rru_A1605	0.12	-0.2
1,893,638	-		Rru_A1605	0.12	-0.1
1,893,638	-		Rru_A1605	0.12	+0.4
1,893,638	-		Rru_A1605	0.12	-0.3
1,893,638	-		Rru_A1605	0.12	-1.2
1,893,638	-		Rru_A1605	0.12	+0.4
1,893,638	-		Rru_A1605	0.12	-0.2
1,893,638	-		Rru_A1605	0.12	-1.1
1,893,638	-		Rru_A1605	0.12	-0.1
1,893,638	-		Rru_A1605	0.12	-1.1
1,893,638	-		Rru_A1605	0.12	-0.1
1,893,638	-		Rru_A1605	0.12	-0.1
1,893,638	-		Rru_A1605	0.12	-2.7
1,893,638	-		Rru_A1605	0.12	-0.5
1,893,664	+		Rru_A1605	0.12	+1.4
1,893,665	-		Rru_A1605	0.12	+0.9
1,893,736	+		Rru_A1605	0.15	+1.2
1,893,736	+		Rru_A1605	0.15	+0.3
1,893,737	-		Rru_A1605	0.15	+1.2
1,893,737	-		Rru_A1605	0.15	-1.1
1,893,739	+		Rru_A1605	0.15	+1.1
1,893,739	+		Rru_A1605	0.15	+1.2
1,893,740	-		Rru_A1605	0.15	+0.1
1,893,740	-		Rru_A1605	0.15	-0.7
1,893,740	-		Rru_A1605	0.15	-0.3
1,893,740	-		Rru_A1605	0.15	+0.4
1,893,740	-		Rru_A1605	0.15	-0.1
1,893,872	-		Rru_A1605	0.19	-0.1
1,893,872	-		Rru_A1605	0.19	-0.1
1,893,872	-		Rru_A1605	0.19	-0.4
1,893,872	-		Rru_A1605	0.19	+0.1
1,893,961	+		Rru_A1605	0.21	-0.1
1,893,962	-		Rru_A1605	0.21	-0.4
1,893,962	-		Rru_A1605	0.21	-0.1
1,894,019	-		Rru_A1605	0.23	+1.2
1,894,081	+		Rru_A1605	0.25	-0.1
1,894,081	+		Rru_A1605	0.25	-0.1
1,894,081	+		Rru_A1605	0.25	-1.9
1,894,081	+		Rru_A1605	0.25	-1.3
1,894,081	+		Rru_A1605	0.25	-0.7
1,894,081	+		Rru_A1605	0.25	+0.1
1,894,081	+		Rru_A1605	0.25	-0.1
1,894,082	-		Rru_A1605	0.25	+1.9
1,894,082	-		Rru_A1605	0.25	-0.1
1,894,082	-		Rru_A1605	0.25	-0.1
1,894,082	-		Rru_A1605	0.25	-0.1
1,894,082	-		Rru_A1605	0.25	-0.1
1,894,082	-		Rru_A1605	0.25	-0.1
1,894,082	-		Rru_A1605	0.25	-0.1
1,894,082	-		Rru_A1605	0.25	-1.3
1,894,082	-		Rru_A1605	0.25	-0.7
1,894,083	+		Rru_A1605	0.25	-0.0
1,894,084	-		Rru_A1605	0.25	+0.9
1,894,122	+		Rru_A1605	0.26	-1.4
1,894,228	+		Rru_A1605	0.29	-0.1
1,894,228	+		Rru_A1605	0.29	-0.7
1,894,229	-		Rru_A1605	0.29	-0.6
1,894,230	+		Rru_A1605	0.29	-0.1
1,894,231	-		Rru_A1605	0.30	-1.7
1,894,243	+		Rru_A1605	0.30	-0.4
1,894,243	+		Rru_A1605	0.30	+0.4
1,894,243	+		Rru_A1605	0.30	-0.4
1,894,244	-		Rru_A1605	0.30	-0.1
1,894,244	-		Rru_A1605	0.30	-0.1
1,894,375	+		Rru_A1605	0.34	+1.2
1,894,376	-		Rru_A1605	0.34	-0.4
1,894,528	+		Rru_A1605	0.39	-1.1
1,894,684	+		Rru_A1605	0.43	-0.1
1,894,685	-		Rru_A1605	0.43	-0.1
1,894,685	-		Rru_A1605	0.43	-0.5
1,894,837	+		Rru_A1605	0.48	+0.0
1,894,838	-		Rru_A1605	0.48	-0.3
1,894,838	-		Rru_A1605	0.48	+0.1
1,894,838	-		Rru_A1605	0.48	-0.5
1,894,859	-		Rru_A1605	0.49	+0.3
1,894,867	+		Rru_A1605	0.49	-0.1
1,894,867	+		Rru_A1605	0.49	+0.7
1,894,867	+		Rru_A1605	0.49	-0.1
1,894,868	-		Rru_A1605	0.49	-1.0
1,894,960	-		Rru_A1605	0.52	-0.1
1,894,960	-		Rru_A1605	0.52	-0.1
1,895,152	+		Rru_A1605	0.57	-0.1
1,895,152	+		Rru_A1605	0.57	+0.0
1,895,153	-		Rru_A1605	0.57	-0.0
1,895,153	-		Rru_A1605	0.57	-0.3
1,895,153	-		Rru_A1605	0.57	-1.1
1,895,197	-		Rru_A1605	0.59	-0.1
1,895,247	+		Rru_A1605	0.60	-0.1
1,895,291	-		Rru_A1605	0.62	+0.2
1,895,291	-		Rru_A1605	0.62	+0.3
1,895,291	-		Rru_A1605	0.62	+0.3
1,895,291	-		Rru_A1605	0.62	+0.8
1,895,490	+		Rru_A1605	0.68	+0.7
1,895,491	-		Rru_A1605	0.68	-0.1
1,895,507	-		Rru_A1605	0.68	-0.6
1,895,507	-		Rru_A1605	0.68	+0.1
1,895,613	+		Rru_A1605	0.71	-0.1
1,895,613	+		Rru_A1605	0.71	-0.1
1,895,613	+		Rru_A1605	0.71	+1.1
1,895,614	-		Rru_A1605	0.71	-0.9
1,895,614	-		Rru_A1605	0.71	-0.3
1,895,614	-		Rru_A1605	0.71	-0.3
1,895,622	+		Rru_A1605	0.72	-0.1
1,895,623	-		Rru_A1605	0.72	-0.6
1,895,689	+		Rru_A1605	0.74	+0.6
1,895,689	+		Rru_A1605	0.74	+0.6
1,895,689	+		Rru_A1605	0.74	+3.2
1,895,690	-		Rru_A1605	0.74	-0.1
1,895,690	-		Rru_A1605	0.74	+0.7
1,895,690	-		Rru_A1605	0.74	-0.1
1,895,690	-		Rru_A1605	0.74	-1.0
1,895,690	-		Rru_A1605	0.74	-0.1
1,895,690	-		Rru_A1605	0.74	+0.2
1,895,690	-		Rru_A1605	0.74	-0.1
1,896,138	+		Rru_A1605	0.87	+1.5
1,896,139	-		Rru_A1605	0.87	-0.8
1,896,139	-		Rru_A1605	0.87	+0.4
1,896,238	+				-0.1
1,896,299	+				-0.1
1,896,299	+				+1.5
1,896,299	+				+1.3
1,896,299	+				+1.2
1,896,300	-				-0.8
1,896,425	+				+1.2
1,896,426	-				-0.5
1,896,448	+				+1.0
1,896,449	-				-1.1
1,896,449	-				-0.1
1,896,455	+				+2.1
1,896,460	+				+1.5
1,896,460	+				+2.4
1,896,460	+				+1.1
1,896,461	-				-0.3
1,896,461	-				-0.8
1,896,461	-				-0.7
1,896,599	+				+1.1
1,896,605	-				-1.1
1,896,846	-				-0.5
1,896,869	+				-1.0
1,896,870	-				-0.1
1,896,914	+		Rru_A1606	0.11	-0.7
1,897,172	+		Rru_A1606	0.23	+0.8
1,897,173	-		Rru_A1606	0.23	-0.1
1,897,173	-		Rru_A1606	0.23	+0.5
1,897,173	-		Rru_A1606	0.23	-1.7
1,897,271	+		Rru_A1606	0.27	-0.3
1,897,271	+		Rru_A1606	0.27	-0.1
1,897,271	+		Rru_A1606	0.27	-0.2
1,897,271	+		Rru_A1606	0.27	-0.2
1,897,272	-		Rru_A1606	0.27	+0.5
1,897,364	+		Rru_A1606	0.32	-0.1
1,897,365	-		Rru_A1606	0.32	-1.2
1,897,365	-		Rru_A1606	0.32	-0.6
1,897,388	+		Rru_A1606	0.33	-0.1
1,897,388	+		Rru_A1606	0.33	-0.1
1,897,409	+		Rru_A1606	0.34	-1.1
1,897,409	+		Rru_A1606	0.34	+0.1
1,897,410	-		Rru_A1606	0.34	-0.6
1,897,480	+		Rru_A1606	0.37	+0.8
1,897,481	-		Rru_A1606	0.37	-0.4
1,897,496	+		Rru_A1606	0.38	-0.3
1,897,496	+		Rru_A1606	0.38	-1.1
1,897,496	+		Rru_A1606	0.38	-0.1
1,897,497	-		Rru_A1606	0.38	-0.1
1,897,505	-		Rru_A1606	0.38	-0.1