Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1517

Experiment: acetate; Light intensity 9 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 9 uM
1,789,409	+		Rru_A1515	0.35	-0.1
1,789,409	+		Rru_A1515	0.35	-0.1
1,789,410	-		Rru_A1515	0.36	+0.5
1,789,410	-		Rru_A1515	0.36	-1.1
1,789,410	-		Rru_A1515	0.36	+0.1
1,789,410	-		Rru_A1515	0.36	+1.2
1,789,587	+		Rru_A1515	0.83	+0.7
1,789,587	+		Rru_A1515	0.83	-0.1
1,789,588	-		Rru_A1515	0.83	+0.7
1,789,685	+				-1.7
1,789,685	+				-0.3
1,789,685	+				+0.3
1,789,700	+		Rru_A1516	0.11	-0.0
1,789,700	+		Rru_A1516	0.11	-0.1
1,789,700	+		Rru_A1516	0.11	-1.1
1,789,711	+		Rru_A1516	0.13	-0.4
1,789,855	+		Rru_A1516	0.44	+1.2
1,789,878	+		Rru_A1516	0.49	-0.1
1,789,878	+		Rru_A1516	0.49	-0.0
1,789,879	-		Rru_A1516	0.49	-0.1
1,789,879	-		Rru_A1516	0.49	-0.1
1,789,879	-		Rru_A1516	0.49	+1.3
1,789,950	+		Rru_A1516	0.64	+1.4
1,789,951	-		Rru_A1516	0.65	+0.2
1,790,063	-		Rru_A1516	0.88	+0.1
1,790,088	+				-0.1
1,790,088	+				-1.0
1,790,089	-				-0.9
1,790,089	-				-0.2
1,790,089	-				-0.1
1,790,209	-				-0.1
1,790,298	-				-1.7
1,790,305	-				-0.1
1,790,316	-				-0.1
1,790,327	+				-0.1
1,790,361	+				+0.1
1,790,361	+				-0.1
1,790,374	-				-0.1
1,790,374	-				-0.5
1,790,397	-				+0.5
1,790,876	+		Rru_A1517	0.69	+1.0
1,790,876	+		Rru_A1517	0.69	-0.5
1,790,876	+		Rru_A1517	0.69	-1.1
1,790,876	+		Rru_A1517	0.69	-0.4
1,790,876	+		Rru_A1517	0.69	-0.1
1,791,395	+		Rru_A1518	0.71	+0.1
1,791,756	+				+1.3
1,791,764	+				-0.1
1,791,764	+				-0.1
1,791,764	+				+0.4
1,791,764	+				-0.1
1,791,793	-				-0.1
1,791,820	+				-0.4
1,791,820	+				-0.1
1,791,821	-				-0.1
1,791,821	-				+0.5
1,791,871	-				+0.4
1,791,917	+				+0.3
1,791,917	+				-0.9
1,791,918	-				+0.5
1,791,918	-				-0.1
1,791,976	+		Rru_A1520	0.11	-0.1
1,792,057	+		Rru_A1520	0.50	-0.1